Variant report

Variant	rs28589990
Chromosome Location	chr4:160471078-160471079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11100237	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12186282	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12506701	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13146333	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1502726	0.88[ASN][1000 genomes]
rs1566700	0.88[ASN][1000 genomes]
rs1604582	0.87[ASN][1000 genomes]
rs1604583	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1893952	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2134422	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2174060	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2348412	0.88[ASN][1000 genomes]
rs2348413	0.88[ASN][1000 genomes]
rs2348414	0.88[ASN][1000 genomes]
rs2881908	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34436280	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4264787	0.87[ASN][1000 genomes]
rs4607168	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6536441	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67023307	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6823356	0.88[ASN][1000 genomes]
rs6835551	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6848958	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6850521	0.87[ASN][1000 genomes]
rs6851325	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6858329	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71609049	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9307991	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs998885	0.88[ASN][1000 genomes]
rs998886	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160468600-160473800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:160469600-160472200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:160470200-160472000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:160470600-160478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:160470800-160471600	Weak transcription	Hela-S3	cervix
6	chr4:160470800-160472200	Weak transcription	Muscle Satellite Cultured Cells	--

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