Variant report

Variant	rs62339593
Chromosome Location	chr4:160468317-160468318
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10003094	0.89[ASN][1000 genomes]
rs11100236	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11732099	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12645160	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12646752	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12648292	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1393576	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1502722	0.96[ASN][1000 genomes]
rs1502744	0.89[ASN][1000 genomes]
rs28453123	0.96[ASN][1000 genomes]
rs4473617	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55650126	0.94[ASN][1000 genomes]
rs55886018	0.89[ASN][1000 genomes]
rs55993310	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs56032650	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs56234927	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs60517538	0.89[ASN][1000 genomes]
rs62337276	0.89[ASN][1000 genomes]
rs62339597	0.94[ASN][1000 genomes]
rs6826002	0.96[ASN][1000 genomes]
rs6853778	0.96[ASN][1000 genomes]
rs7692467	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160459000-160468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160460200-160468800	Weak transcription	HSMM	muscle
3	chr4:160465200-160468400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:160468200-160470800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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