Variant report

Variant	rs7655375
Chromosome Location	chr4:103361487-103361488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103359723..103361516-chr4:103422795..103425601,2	MCF-7	breast:
2	chr4:100992112..100993959-chr4:103361272..103364197,2	K562	blood:
3	chr4:103359997..103362095-chr4:103788342..103791320,2	MCF-7	breast:
4	chr4:103360987..103364033-chr4:103366113..103369432,3	K562	blood:
5	chr4:103358314..103362750-chr4:103421196..103424266,4	MCF-7	breast:
6	chr4:103360961..103363520-chr4:103367735..103369609,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109320	Chromatin interaction
ENSG00000260651	Chromatin interaction
ENSG00000145354	Chromatin interaction
ENSG00000109332	Chromatin interaction

rs_ID	r²[population]
rs10031415	0.87[CEU][hapmap]
rs1585607	0.88[CEU][hapmap]
rs7685474	0.88[CEU][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs7655375	SLC39A8	cis	frontal cortex	BrainEAC

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103352400-103363000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:103358600-103363800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:103359000-103362000	Enhancers	HSMMtube	muscle
4	chr4:103359400-103361600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:103359600-103361600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:103359600-103361600	Enhancers	NHEK	skin
7	chr4:103359600-103362000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:103359800-103361600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:103359800-103361600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:103359800-103361800	Enhancers	HepG2	liver
11	chr4:103359800-103362800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:103360000-103361600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:103360000-103361800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:103360000-103361800	Enhancers	Liver	Liver
15	chr4:103360200-103361600	Flanking Active TSS	A549	lung
16	chr4:103360200-103362000	Enhancers	Fetal Lung	lung
17	chr4:103360600-103363000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:103361000-103361800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:103361200-103361600	Enhancers	NHDF-Ad	bronchial
20	chr4:103361400-103361800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:103361400-103363000	Weak transcription	Pancreas	Pancrea
22	chr4:103361400-103364400	Weak transcription	K562	blood
23	chr4:103361400-103368200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:103361400-103369400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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