Variant report

Variant	rs7656011
Chromosome Location	chr4:82395549-82395550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4693277	0.83[AFR][1000 genomes]
rs57077180	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60006878	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7667427	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82393800-82395600	Enhancers	Gastric	stomach
2	chr4:82393800-82395800	Enhancers	Colon Smooth Muscle	Colon
3	chr4:82393800-82396000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:82393800-82396000	Enhancers	Stomach Mucosa	stomach
5	chr4:82394000-82396600	Weak transcription	Fetal Kidney	kidney
6	chr4:82394400-82395600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:82394400-82395800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:82394600-82395600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:82394600-82395600	Weak transcription	Esophagus	oesophagus
10	chr4:82394600-82395600	Enhancers	Lung	lung
11	chr4:82395200-82395600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:82395400-82395600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:82395400-82395600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:82395400-82395600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr4:82395400-82395600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:82395400-82395600	Enhancers	Colonic Mucosa	Colon
17	chr4:82395400-82395600	Enhancers	Pancreas	Pancrea
18	chr4:82395400-82395600	Flanking Active TSS	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links