Variant report

Variant	rs57077180
Chromosome Location	chr4:82408194-82408195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13353696	0.81[AMR][1000 genomes]
rs28408727	0.81[AMR][1000 genomes]
rs4693277	0.89[AFR][1000 genomes]
rs56934019	0.81[AMR][1000 genomes]
rs60006878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6846142	0.81[AMR][1000 genomes]
rs72884907	0.81[AMR][1000 genomes]
rs73829600	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7656011	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7667427	0.91[EUR][1000 genomes]
rs7693787	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82406200-82408200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:82406400-82408200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:82406400-82408200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:82406400-82408200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:82406400-82408200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:82406800-82408400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:82407000-82413600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:82407400-82408200	Enhancers	Stomach Mucosa	stomach
9	chr4:82407600-82408200	Enhancers	Placenta	Placenta
10	chr4:82407800-82408200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:82408000-82408200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:82408000-82408200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:82408000-82408400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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