Variant report

Variant	rs7693787
Chromosome Location	chr4:82407937-82407938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10018892	0.91[AMR][1000 genomes]
rs10019254	0.91[AMR][1000 genomes]
rs10440362	0.92[EUR][1000 genomes]
rs13353696	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28393966	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28408727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28410139	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56934019	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57077180	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60006878	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6846142	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72884907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829600	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82406200-82408200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:82406400-82408200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:82406400-82408200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:82406400-82408200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:82406400-82408200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:82406800-82408000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:82406800-82408000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:82406800-82408400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:82407000-82413600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:82407200-82408000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:82407400-82408000	Enhancers	NHEK	skin
12	chr4:82407400-82408200	Enhancers	Stomach Mucosa	stomach
13	chr4:82407600-82408000	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr4:82407600-82408200	Enhancers	Placenta	Placenta
15	chr4:82407800-82408000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:82407800-82408200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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