Variant report

Variant	rs10018892
Chromosome Location	chr4:82422757-82422758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10019254	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13353696	1.00[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes]
rs28393966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28408727	0.91[AMR][1000 genomes]
rs28410139	0.83[AMR][1000 genomes]
rs6846142	0.91[AMR][1000 genomes]
rs72884907	0.91[AMR][1000 genomes]
rs73829600	0.91[AMR][1000 genomes]
rs7693787	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005254	chr4:82416237-82521768	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82413800-82425200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:82415800-82423800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:82415800-82425800	Weak transcription	Right Atrium	heart
4	chr4:82415800-82426000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:82416600-82427600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:82417200-82423400	Weak transcription	Primary B cells from cord blood	blood
7	chr4:82419400-82423000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:82419600-82425200	Weak transcription	Lung	lung
9	chr4:82419600-82425400	Weak transcription	Placenta	Placenta
10	chr4:82419800-82425400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:82420200-82424200	Enhancers	Fetal Brain Male	brain
12	chr4:82420400-82424600	Enhancers	Brain Germinal Matrix	brain
13	chr4:82420600-82425800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:82420800-82431600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:82421400-82423400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:82421400-82423600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:82421400-82423600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:82421400-82424800	Weak transcription	Fetal Lung	lung
19	chr4:82421400-82425400	Weak transcription	Primary T cells from cord blood	blood
20	chr4:82421400-82425400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:82421400-82425800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr4:82421600-82426000	Enhancers	Fetal Brain Female	brain
23	chr4:82421600-82429000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:82421800-82423600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:82421800-82425600	Weak transcription	Brain Anterior Caudate	brain
26	chr4:82422200-82425600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:82422400-82424600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:82422400-82424800	Weak transcription	Adipose Nuclei	Adipose
29	chr4:82422600-82423800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr4:82422600-82425200	Weak transcription	Fetal Kidney	kidney
31	chr4:82422600-82425400	Weak transcription	Fetal Thymus	thymus
32	chr4:82422600-82425400	Weak transcription	Spleen	Spleen

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