Variant report

Variant	rs6846142
Chromosome Location	chr4:82410943-82410944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10018892	0.91[AMR][1000 genomes]
rs10019254	0.91[AMR][1000 genomes]
rs10440362	0.92[EUR][1000 genomes]
rs13353696	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28393966	0.91[AMR][1000 genomes]
rs28408727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28410139	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56934019	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57077180	0.81[AMR][1000 genomes]
rs60006878	0.81[AMR][1000 genomes]
rs72884907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829600	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693787	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82407000-82413600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:82408200-82412000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:82408200-82413200	Weak transcription	Stomach Mucosa	stomach
4	chr4:82408400-82413600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:82410000-82415200	Weak transcription	Thymus	Thymus
6	chr4:82410400-82411400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:82410800-82411800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:82410800-82415000	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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