Variant report

Variant	rs7656054
Chromosome Location	chr4:28480415-28480416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10026350	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028825	0.90[ASN][1000 genomes]
rs10033636	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10440286	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10440287	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10939215	0.90[ASN][1000 genomes]
rs11725829	0.90[ASN][1000 genomes]
rs11735007	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737097	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945110	0.90[ASN][1000 genomes]
rs12644986	0.90[ASN][1000 genomes]
rs12647191	0.89[EUR][1000 genomes]
rs13123430	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123896	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399128	0.90[ASN][1000 genomes]
rs167108	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17629858	0.90[ASN][1000 genomes]
rs186038	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995908	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136817	0.90[ASN][1000 genomes]
rs2136819	0.90[ASN][1000 genomes]
rs28505281	0.88[ASN][1000 genomes]
rs28513492	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs292058	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692053	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692054	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692327	0.88[ASN][1000 genomes]
rs55960537	0.90[ASN][1000 genomes]
rs56250817	0.90[ASN][1000 genomes]
rs56295855	0.87[ASN][1000 genomes]
rs56395213	0.90[ASN][1000 genomes]
rs60841055	0.90[ASN][1000 genomes]
rs61792109	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673733	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824056	0.90[ASN][1000 genomes]
rs6833080	0.87[ASN][1000 genomes]
rs6835655	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836810	0.90[ASN][1000 genomes]
rs6854763	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213497	0.90[ASN][1000 genomes]
rs7653895	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674364	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28476600-28484400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28479800-28481000	Enhancers	Fetal Brain Male	brain
3	chr4:28480000-28481000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:28480200-28481200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:28480200-28481400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:28480400-28480800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:28480400-28480800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:28480400-28480800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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