Variant report

Variant	rs1399128
Chromosome Location	chr4:28512368-28512369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10026350	0.90[ASN][1000 genomes]
rs10028825	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033636	0.90[ASN][1000 genomes]
rs10440286	0.81[ASN][1000 genomes]
rs10939215	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725829	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735007	0.90[ASN][1000 genomes]
rs11737097	0.90[ASN][1000 genomes]
rs11936534	0.85[EUR][1000 genomes]
rs11945110	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12644986	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123430	0.90[ASN][1000 genomes]
rs13123896	0.90[ASN][1000 genomes]
rs167108	0.90[ASN][1000 genomes]
rs17629858	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186038	0.90[ASN][1000 genomes]
rs1995908	0.90[ASN][1000 genomes]
rs2136817	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136818	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2136819	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505281	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28513492	0.87[ASN][1000 genomes]
rs292058	0.90[ASN][1000 genomes]
rs4692053	0.90[ASN][1000 genomes]
rs4692054	0.88[ASN][1000 genomes]
rs4692327	0.99[ASN][1000 genomes]
rs55960537	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56250817	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56295855	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56395213	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60841055	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792109	0.90[ASN][1000 genomes]
rs673733	0.90[ASN][1000 genomes]
rs6824056	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833080	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6835655	0.90[ASN][1000 genomes]
rs6836810	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854763	0.90[ASN][1000 genomes]
rs73213497	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213501	0.81[ASN][1000 genomes]
rs7653895	0.90[ASN][1000 genomes]
rs7656054	0.90[ASN][1000 genomes]
rs7674364	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv12300	chr4:28511836-28512931	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3523834	chr4:28511856-28513344	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3523835	chr4:28511874-28513398	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3523836	chr4:28511887-28513301	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3464966	chr4:28511898-28513300	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3464968	chr4:28511900-28513285	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3464967	chr4:28511911-28513252	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3464965	chr4:28511928-28513285	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3464969	chr4:28511968-28513207	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3523833	chr4:28511978-28513205	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3523837	chr4:28511978-28513205	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3464970	chr4:28511982-28513203	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3393961	chr4:28512309-28512901	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28500000-28520400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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