Variant report
| Variant | rs11936534 |
|---|---|
| Chromosome Location | chr4:28542838-28542839 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10028825 | 0.80[EUR][1000 genomes] |
| rs10939215 | 0.80[EUR][1000 genomes] |
| rs10939217 | 0.90[ASN][1000 genomes] |
| rs11725829 | 0.82[EUR][1000 genomes] |
| rs11737570 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12644986 | 0.82[EUR][1000 genomes] |
| rs1399128 | 0.85[EUR][1000 genomes] |
| rs1567492 | 0.90[ASN][1000 genomes] |
| rs17629858 | 0.81[EUR][1000 genomes] |
| rs1996164 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2136817 | 0.80[EUR][1000 genomes] |
| rs2136818 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2136819 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4692329 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs55960537 | 0.80[EUR][1000 genomes] |
| rs56148716 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56250817 | 0.81[EUR][1000 genomes] |
| rs56395213 | 0.81[EUR][1000 genomes] |
| rs60841055 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6448586 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs68144005 | 0.80[ASN][1000 genomes] |
| rs6824056 | 0.81[EUR][1000 genomes] |
| rs6836810 | 0.82[EUR][1000 genomes] |
| rs73213497 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010133 | chr4:28273244-28642942 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014938 | chr4:28277683-28642942 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:28539600-28555200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
