Variant report

Variant	rs2136818
Chromosome Location	chr4:28539800-28539801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10028825	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10939215	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10939217	0.84[ASN][1000 genomes]
rs11725829	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11737570	0.90[ASN][1000 genomes]
rs11936534	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11945110	0.81[EUR][1000 genomes]
rs12644986	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1399128	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1567492	0.84[ASN][1000 genomes]
rs17629858	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2136817	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2136819	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28505281	0.83[EUR][1000 genomes]
rs4692329	0.82[ASN][1000 genomes]
rs55960537	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56148716	0.82[ASN][1000 genomes]
rs56250817	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56295855	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56395213	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60841055	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6448586	0.90[ASN][1000 genomes]
rs68194475	0.83[ASN][1000 genomes]
rs6824056	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6833080	0.85[EUR][1000 genomes]
rs6836810	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73213497	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28539600-28555200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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