Variant report

Variant	rs7656942
Chromosome Location	chr4:15571434-15571435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10006230	0.81[YRI][hapmap]
rs4698115	0.87[YRI][hapmap]
rs6821494	0.90[YRI][hapmap]
rs6832789	0.87[YRI][hapmap]
rs7658528	0.87[YRI][hapmap]
rs7674380	0.87[YRI][hapmap]
rs7684550	0.87[YRI][hapmap]
rs7690497	0.86[YRI][hapmap]
rs9884443	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
2	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:15517800-15593600	Weak transcription	HUVEC	blood vessel
4	chr4:15520000-15572400	Weak transcription	Small Intestine	intestine
5	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
6	chr4:15544800-15571600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:15544800-15576200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:15545000-15575600	Weak transcription	Fetal Heart	heart
9	chr4:15546000-15589600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:15546400-15572600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
12	chr4:15554000-15572800	Strong transcription	Fetal Brain Female	brain
13	chr4:15554600-15601400	Weak transcription	A549	lung
14	chr4:15555800-15589400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:15556000-15603200	Weak transcription	Fetal Thymus	thymus
16	chr4:15558400-15574600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:15559600-15579000	Strong transcription	Fetal Muscle Trunk	muscle
18	chr4:15560200-15571800	Weak transcription	HepG2	liver
19	chr4:15560200-15577400	Weak transcription	HSMMtube	muscle
20	chr4:15560200-15580800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr4:15560400-15572000	Weak transcription	Stomach Mucosa	stomach
22	chr4:15561400-15572400	Strong transcription	Fetal Muscle Leg	muscle
23	chr4:15561600-15572600	Strong transcription	Fetal Stomach	stomach
24	chr4:15561800-15572400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:15561800-15572400	Strong transcription	Ovary	ovary
26	chr4:15562000-15573400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr4:15562400-15572400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr4:15562400-15573000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:15562600-15573000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:15562600-15574800	Strong transcription	Brain Germinal Matrix	brain
31	chr4:15563200-15572200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:15563600-15572200	Strong transcription	NHLF	lung
33	chr4:15563600-15576600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:15563800-15572800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:15563800-15573200	Strong transcription	Fetal Intestine Small	intestine
36	chr4:15564000-15572200	Strong transcription	Adipose Nuclei	Adipose
37	chr4:15564000-15572200	Strong transcription	Liver	Liver
38	chr4:15564000-15572200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr4:15564000-15600600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr4:15564200-15572200	Strong transcription	Fetal Intestine Large	intestine
41	chr4:15564200-15573200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr4:15564200-15574200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr4:15564400-15572200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:15564400-15573200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:15564400-15603200	Weak transcription	HMEC	breast
46	chr4:15564600-15572200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr4:15564600-15572200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr4:15564600-15603600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:15565000-15571800	Strong transcription	Brain Anterior Caudate	brain
50	chr4:15565000-15572200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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