Variant report

Variant	rs7674380
Chromosome Location	chr4:15566647-15566648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10003929	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10005158	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10006230	0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027900	1.00[AMR][1000 genomes]
rs10034462	0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10223039	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11930259	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13327973	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13328011	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28374013	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489118	0.83[AFR][1000 genomes]
rs28546094	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4698115	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6821494	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832789	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844272	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7437025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7656942	0.87[YRI][hapmap]
rs7658171	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7658528	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684550	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690497	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884443	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15487400-15570400	Weak transcription	Psoas Muscle	Psoas
2	chr4:15502800-15577600	Weak transcription	Right Ventricle	heart
3	chr4:15512000-15580000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:15517800-15593600	Weak transcription	HUVEC	blood vessel
5	chr4:15520000-15572400	Weak transcription	Small Intestine	intestine
6	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
7	chr4:15539000-15570400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:15543800-15570600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:15544800-15571600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:15544800-15576200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:15545000-15575600	Weak transcription	Fetal Heart	heart
12	chr4:15546000-15589600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:15546200-15569400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:15546400-15572600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:15546800-15569200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:15548800-15570800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:15549600-15570800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
19	chr4:15554000-15572800	Strong transcription	Fetal Brain Female	brain
20	chr4:15554600-15601400	Weak transcription	A549	lung
21	chr4:15555000-15566800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:15555800-15569200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:15555800-15589400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:15556000-15569200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:15556000-15603200	Weak transcription	Fetal Thymus	thymus
26	chr4:15557400-15567600	Weak transcription	Fetal Brain Male	brain
27	chr4:15558400-15574600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:15559600-15579000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr4:15560200-15570200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:15560200-15571800	Weak transcription	HepG2	liver
31	chr4:15560200-15577400	Weak transcription	HSMMtube	muscle
32	chr4:15560200-15580800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:15560400-15572000	Weak transcription	Stomach Mucosa	stomach
34	chr4:15561400-15572400	Strong transcription	Fetal Muscle Leg	muscle
35	chr4:15561600-15572600	Strong transcription	Fetal Stomach	stomach
36	chr4:15561800-15572400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:15561800-15572400	Strong transcription	Ovary	ovary
38	chr4:15562000-15573400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr4:15562200-15569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:15562400-15570000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:15562400-15572400	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr4:15562400-15573000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:15562600-15567400	Strong transcription	Fetal Lung	lung
44	chr4:15562600-15571200	Strong transcription	Left Ventricle	heart
45	chr4:15562600-15573000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:15562600-15574800	Strong transcription	Brain Germinal Matrix	brain
47	chr4:15563200-15572200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:15563600-15572200	Strong transcription	NHLF	lung
49	chr4:15563600-15576600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr4:15563800-15568600	Weak transcription	Primary B cells from cord blood	blood

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