Variant report

Variant	rs7657078
Chromosome Location	chr4:84539539-84539540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10014103	1.00[AMR][1000 genomes]
rs72938801	1.00[AMR][1000 genomes]
rs9968305	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84535200-84540200	Weak transcription	Psoas Muscle	Psoas
2	chr4:84536400-84542200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:84536600-84541400	Weak transcription	Aorta	Aorta
4	chr4:84536800-84542400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:84536800-84547800	Weak transcription	Pancreas	Pancrea
6	chr4:84537400-84540400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:84537600-84540400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:84537600-84543000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:84537800-84542200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:84538200-84541400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr4:84538400-84539800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:84538400-84540000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:84538400-84540200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:84538400-84540600	Enhancers	Fetal Intestine Large	intestine
15	chr4:84538600-84540200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:84538800-84540000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:84538800-84540000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:84538800-84540400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:84538800-84540400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr4:84538800-84540400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:84538800-84540400	Enhancers	Fetal Lung	lung
22	chr4:84538800-84540600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr4:84538800-84540600	Enhancers	Fetal Stomach	stomach
24	chr4:84538800-84540600	Enhancers	NHLF	lung
25	chr4:84538800-84540800	Enhancers	Duodenum Mucosa	Duodenum
26	chr4:84538800-84540800	Enhancers	NHDF-Ad	bronchial
27	chr4:84538800-84541200	Enhancers	Placenta	Placenta
28	chr4:84538800-84541200	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr4:84538800-84541200	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:84538800-84541600	Enhancers	Primary hematopoietic stem cells	blood
31	chr4:84539000-84540000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:84539000-84540200	Weak transcription	Left Ventricle	heart
33	chr4:84539000-84540200	Enhancers	HUVEC	blood vessel
34	chr4:84539000-84540400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:84539000-84540400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:84539000-84540400	Enhancers	Fetal Intestine Small	intestine
37	chr4:84539000-84540600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:84539000-84540600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:84539000-84540800	Enhancers	Fetal Kidney	kidney
40	chr4:84539000-84541000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr4:84539000-84541400	Enhancers	HMEC	breast
42	chr4:84539200-84539600	Flanking Active TSS	Fetal Heart	heart
43	chr4:84539200-84540200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:84539200-84540200	Weak transcription	Fetal Muscle Leg	muscle
45	chr4:84539200-84540400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr4:84539200-84540600	Enhancers	Colon Smooth Muscle	Colon
47	chr4:84539200-84540800	Enhancers	HepG2	liver
48	chr4:84539200-84541000	Enhancers	Hela-S3	cervix
49	chr4:84539200-84541200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:84539400-84539800	Flanking Active TSS	A549	lung

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