Variant report

Variant	rs10014103
Chromosome Location	chr4:84512428-84512429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10020093	0.91[AFR][1000 genomes]
rs28483274	0.91[AFR][1000 genomes]
rs28630731	0.91[AFR][1000 genomes]
rs28637279	0.91[AFR][1000 genomes]
rs72938801	1.00[AMR][1000 genomes]
rs7657078	1.00[AMR][1000 genomes]
rs9968305	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84486000-84513000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:84488600-84516800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:84495600-84516600	Weak transcription	Fetal Intestine Large	intestine
4	chr4:84495600-84516800	Weak transcription	Right Ventricle	heart
5	chr4:84500000-84512800	Weak transcription	Fetal Intestine Small	intestine
6	chr4:84503600-84520400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:84503600-84525800	Weak transcription	Psoas Muscle	Psoas
8	chr4:84503800-84516600	Weak transcription	NH-A	brain
9	chr4:84503800-84516800	Weak transcription	Spleen	Spleen
10	chr4:84503800-84524000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:84503800-84524400	Weak transcription	Lung	lung
12	chr4:84503800-84525800	Weak transcription	Colonic Mucosa	Colon
13	chr4:84503800-84527200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:84503800-84528200	Weak transcription	Gastric	stomach
15	chr4:84504000-84514600	Weak transcription	Fetal Brain Male	brain
16	chr4:84504000-84520200	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:84504000-84524000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:84504200-84516000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:84504200-84516600	Weak transcription	Ovary	ovary
20	chr4:84504200-84520400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:84504200-84520400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:84504200-84524000	Weak transcription	Fetal Heart	heart
23	chr4:84504200-84524000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:84504200-84524000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:84504400-84526600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr4:84505000-84513400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:84506000-84527200	Weak transcription	Aorta	Aorta
28	chr4:84507200-84513400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr4:84508000-84521200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:84509000-84513800	Strong transcription	A549	lung
31	chr4:84509400-84513200	Enhancers	Fetal Lung	lung
32	chr4:84509800-84516600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:84509800-84516600	Weak transcription	Left Ventricle	heart
34	chr4:84510800-84515600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:84510800-84516000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:84510800-84527200	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:84511000-84528600	Weak transcription	NHLF	lung
38	chr4:84511200-84512600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:84511200-84516800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr4:84511800-84513600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:84511800-84517000	Weak transcription	HMEC	breast
42	chr4:84512000-84517000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:84512200-84512800	Enhancers	Adipose Nuclei	Adipose
44	chr4:84512200-84513000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:84512400-84513400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:84512400-84524000	Weak transcription	Liver	Liver

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