Variant report

Variant	rs10020093
Chromosome Location	chr4:84543995-84543996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10014103	0.91[AFR][1000 genomes]
rs28483274	1.00[AFR][1000 genomes]
rs28534439	0.84[AFR][1000 genomes]
rs28630731	1.00[AFR][1000 genomes]
rs28637279	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84536800-84547800	Weak transcription	Pancreas	Pancrea
2	chr4:84540600-84546600	Weak transcription	Psoas Muscle	Psoas
3	chr4:84541600-84546600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:84542000-84544600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr4:84542000-84545800	Weak transcription	Fetal Heart	heart
6	chr4:84542400-84544600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:84542600-84547000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:84542600-84548600	Weak transcription	Colonic Mucosa	Colon
9	chr4:84543000-84544200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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