Variant report

Variant	rs28630731
Chromosome Location	chr4:84537844-84537845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84533206..84535696-chr4:84536817..84538510,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10014103	0.91[AFR][1000 genomes]
rs10020093	1.00[AFR][1000 genomes]
rs28483274	1.00[AFR][1000 genomes]
rs28534439	0.84[AFR][1000 genomes]
rs28637279	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84526800-84539400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:84535200-84540200	Weak transcription	Psoas Muscle	Psoas
3	chr4:84535600-84538800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:84536000-84539400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:84536400-84538800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:84536400-84542200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:84536600-84538200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:84536600-84541400	Weak transcription	Aorta	Aorta
9	chr4:84536800-84538200	Weak transcription	Fetal Heart	heart
10	chr4:84536800-84538400	Weak transcription	Left Ventricle	heart
11	chr4:84536800-84542400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:84536800-84547800	Weak transcription	Pancreas	Pancrea
13	chr4:84537400-84538000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:84537400-84540400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:84537600-84538800	Weak transcription	Fetal Lung	lung
16	chr4:84537600-84540400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:84537600-84543000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr4:84537800-84538400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:84537800-84538800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:84537800-84538800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:84537800-84538800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:84537800-84539400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:84537800-84542200	Weak transcription	H1 Cell Line	embryonic stem cell

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