Variant report

Variant	rs7657393
Chromosome Location	chr4:120730146-120730147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11098539	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11731992	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11737790	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12374391	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12509484	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12510985	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13114198	0.83[ASN][1000 genomes]
rs13119094	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13130176	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13130468	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1587736	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17363983	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1910423	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2389918	0.89[ASN][1000 genomes]
rs2389919	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2389954	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34021877	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34463615	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35229169	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35579162	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35674683	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3816243	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4834813	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4834817	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61485416	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62319692	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6534157	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67101952	0.82[ASN][1000 genomes]
rs6822154	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6822164	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6847508	0.91[ASN][1000 genomes]
rs6856110	0.89[ASN][1000 genomes]
rs6856904	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6858155	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72682879	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs968757	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv3443538	chr4:120725398-120755486	Weak transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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