Variant report
| Variant | rs968757 |
|---|---|
| Chromosome Location | chr4:120757454-120757455 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11098539 | 0.83[ASN][1000 genomes] |
| rs11737790 | 0.99[ASN][1000 genomes] |
| rs12374391 | 0.97[ASN][1000 genomes] |
| rs12509484 | 0.85[ASN][1000 genomes] |
| rs13119094 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs13130176 | 0.85[ASN][1000 genomes] |
| rs13130468 | 0.85[ASN][1000 genomes] |
| rs1587736 | 0.96[ASN][1000 genomes] |
| rs17363983 | 1.00[ASN][1000 genomes] |
| rs1910423 | 0.95[ASN][1000 genomes] |
| rs2389918 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2389919 | 0.99[ASN][1000 genomes] |
| rs28562576 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34021877 | 0.94[ASN][1000 genomes] |
| rs34463615 | 0.94[ASN][1000 genomes] |
| rs35229169 | 0.94[ASN][1000 genomes] |
| rs35579162 | 0.85[ASN][1000 genomes] |
| rs35674683 | 1.00[ASN][1000 genomes] |
| rs3816243 | 0.89[ASN][1000 genomes] |
| rs4834813 | 0.85[ASN][1000 genomes] |
| rs4834817 | 0.99[ASN][1000 genomes] |
| rs62319692 | 0.93[ASN][1000 genomes] |
| rs6534157 | 0.99[ASN][1000 genomes] |
| rs67101952 | 0.90[ASN][1000 genomes] |
| rs6822154 | 0.98[ASN][1000 genomes] |
| rs6822164 | 0.98[ASN][1000 genomes] |
| rs6847508 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6856110 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6856904 | 0.98[ASN][1000 genomes] |
| rs6858155 | 0.98[ASN][1000 genomes] |
| rs72682879 | 0.93[ASN][1000 genomes] |
| rs7657393 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7688177 | 0.86[ASN][1000 genomes] |
| rs7690791 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs968757 | SYNPO2 | cis | cerebellum | SCAN |
| rs968757 | QRFPR | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:120756800-120757600 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr4:120757200-120758200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr4:120757200-120758600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
