Variant report
| Variant | rs7688177 |
|---|---|
| Chromosome Location | chr4:120760872-120760873 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11737790 | 0.86[ASN][1000 genomes] |
| rs12374391 | 0.87[ASN][1000 genomes] |
| rs13114198 | 0.83[ASN][1000 genomes] |
| rs13119094 | 0.86[ASW][hapmap];0.93[CHD][hapmap];0.90[YRI][hapmap] |
| rs1587736 | 0.86[ASN][1000 genomes] |
| rs17363983 | 0.86[ASN][1000 genomes] |
| rs1910423 | 0.87[ASN][1000 genomes] |
| rs2389918 | 0.87[ASN][1000 genomes] |
| rs2389919 | 0.85[ASN][1000 genomes] |
| rs34021877 | 0.86[ASN][1000 genomes] |
| rs34463615 | 0.86[ASN][1000 genomes] |
| rs35229169 | 0.86[ASN][1000 genomes] |
| rs35674683 | 0.86[ASN][1000 genomes] |
| rs4834817 | 0.85[ASN][1000 genomes] |
| rs62319692 | 0.83[ASN][1000 genomes] |
| rs6534157 | 0.85[ASN][1000 genomes] |
| rs6822154 | 0.87[ASN][1000 genomes] |
| rs6822164 | 0.87[ASN][1000 genomes] |
| rs6847508 | 0.88[ASN][1000 genomes] |
| rs6856110 | 0.86[ASN][1000 genomes] |
| rs6856904 | 0.87[ASN][1000 genomes] |
| rs6858155 | 0.84[ASN][1000 genomes] |
| rs72682879 | 0.80[ASN][1000 genomes] |
| rs7657393 | 0.86[ASW][hapmap];0.93[CHD][hapmap];0.90[YRI][hapmap] |
| rs968757 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7688177 | FLJ14186///LOC284701///LOC441124///LOC728624 | Cis_chr | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:120758600-120794000 | Weak transcription | Aorta | Aorta |
