Variant report

Variant	rs7657443
Chromosome Location	chr4:87757275-87757276
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87755836..87758517-chr4:87776083..87778116,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13141097	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1374934	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1550931	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2594281	1.00[JPT][hapmap]
rs2594282	1.00[JPT][hapmap]
rs2594284	1.00[JPT][hapmap]
rs2705627	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4508849	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4693788	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs58275023	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58425767	0.84[ASN][1000 genomes]
rs6531936	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes]
rs6531937	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes]
rs73838351	0.84[AMR][1000 genomes]
rs7663218	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
2	chr4:87739800-87757600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
4	chr4:87745400-87757400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:87752600-87764400	Weak transcription	Adipose Nuclei	Adipose
6	chr4:87753000-87758000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:87753000-87765600	Weak transcription	Esophagus	oesophagus
8	chr4:87753000-87766800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:87753200-87757600	Enhancers	Hela-S3	cervix
10	chr4:87753200-87757800	Genic enhancers	NHEK	skin
11	chr4:87753200-87762000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:87753400-87758600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:87755000-87757800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:87755600-87758800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:87756400-87758800	Weak transcription	Fetal Lung	lung
16	chr4:87756400-87759200	Weak transcription	HMEC	breast
17	chr4:87756400-87761800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:87756400-87762200	Weak transcription	NHDF-Ad	bronchial
19	chr4:87756600-87758000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:87756600-87758600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:87756600-87758800	Weak transcription	NHLF	lung
22	chr4:87757000-87757400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:87757000-87757600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:87757200-87769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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