Variant report

Variant	rs7657843
Chromosome Location	chr4:2978442-2978443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:2965936..2968451-chr4:2977512..2979704,2	K562	blood:
2	chr4:2978330..2980789-chr4:2984155..2986237,2	MCF-7	breast:
3	chr4:2963003..2965812-chr4:2978190..2981677,5	MCF-7	breast:
4	chr4:2970449..2973378-chr4:2977803..2979783,2	MCF-7	breast:
5	chr4:2755330..2758068-chr4:2977611..2979327,2	K562	blood:
6	chr4:2976299..2978558-chr4:2988951..2991027,2	K562	blood:

Variant related genes	Relation type
ENSG00000087269	Chromatin interaction
ENSG00000168884	Chromatin interaction
ENSG00000125388	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16843459	1.00[AMR][1000 genomes]
rs16843490	1.00[AMR][1000 genomes]
rs16843682	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35304823	1.00[AMR][1000 genomes]
rs35983864	1.00[AMR][1000 genomes]
rs55676948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55909241	1.00[AFR][1000 genomes]
rs56204916	1.00[AFR][1000 genomes]
rs56315133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57551202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57960709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58112051	1.00[AFR][1000 genomes]
rs58279895	1.00[AMR][1000 genomes]
rs58479563	1.00[AFR][1000 genomes]
rs58555511	1.00[AFR][1000 genomes]
rs58936143	1.00[AFR][1000 genomes]
rs60480235	1.00[AFR][1000 genomes]
rs60514033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60745500	1.00[AMR][1000 genomes]
rs61377156	1.00[AFR][1000 genomes]
rs61652297	1.00[AMR][1000 genomes]
rs61747144	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6830234	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6837197	1.00[AFR][1000 genomes]
rs6840149	1.00[AFR][1000 genomes]
rs6852880	1.00[AFR][1000 genomes]
rs73792109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73792110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73792112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73792115	1.00[AMR][1000 genomes]
rs73792116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73792119	0.89[AFR][1000 genomes]
rs73792122	1.00[AFR][1000 genomes]
rs73794816	1.00[AMR][1000 genomes]
rs73794824	1.00[AMR][1000 genomes]
rs73794825	1.00[AMR][1000 genomes]
rs73794827	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7676937	1.00[AMR][1000 genomes]
rs7699427	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	nsv1008436	chr4:2947160-3031195	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv536998	chr4:2947160-3031195	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv593438	chr4:2948456-3030097	Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1008527	chr4:2957814-3019042	Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1014013	chr4:2959876-3009507	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv536999	chr4:2959876-3009507	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv878453	chr4:2963222-3021383	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1008781	chr4:2964080-3019042	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv1003528	chr4:2964261-3011568	Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv537000	chr4:2964261-3011568	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv1014675	chr4:2968222-3012723	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	esv1792095	chr4:2972168-3004238	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2966400-2978600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:2966400-2980200	Weak transcription	Left Ventricle	heart
3	chr4:2966400-2980200	Weak transcription	Ovary	ovary
4	chr4:2966400-2980400	Weak transcription	Spleen	Spleen
5	chr4:2966600-2978600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:2966600-2978800	Weak transcription	NH-A	brain
7	chr4:2966600-2979000	Weak transcription	HSMM	muscle
8	chr4:2966600-2979600	Weak transcription	Primary T cells from cord blood	blood
9	chr4:2966600-2982000	Weak transcription	Brain Germinal Matrix	brain
10	chr4:2966600-2982200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:2966800-2978800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:2966800-2978800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:2966800-2979000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:2966800-2979200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:2966800-2979400	Weak transcription	Brain Substantia Nigra	brain
16	chr4:2966800-2982200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:2967000-2978800	Weak transcription	Osteobl	bone
18	chr4:2967000-2979200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:2967200-2978600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:2967200-2978600	Weak transcription	HSMMtube	muscle
21	chr4:2967200-2978800	Weak transcription	NHDF-Ad	bronchial
22	chr4:2967200-2979000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:2967200-2979000	Weak transcription	NHLF	lung
24	chr4:2967200-2979200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:2967200-2980200	Weak transcription	Brain Angular Gyrus	brain
26	chr4:2967200-2983800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:2967400-2979400	Weak transcription	Esophagus	oesophagus
28	chr4:2967400-2982600	Weak transcription	Pancreas	Pancrea
29	chr4:2967400-2983000	Weak transcription	Fetal Lung	lung
30	chr4:2967400-2983600	Weak transcription	Gastric	stomach
31	chr4:2967600-2978600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:2967600-2978600	Weak transcription	Fetal Heart	heart
33	chr4:2969000-2978600	Weak transcription	Fetal Brain Male	brain
34	chr4:2975400-2978800	Weak transcription	Fetal Brain Female	brain
35	chr4:2975400-2979000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:2975400-2980200	Weak transcription	Right Ventricle	heart
37	chr4:2975400-2980400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr4:2975600-2981800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:2975800-2981800	Weak transcription	Fetal Stomach	stomach
40	chr4:2977400-2978800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:2977800-2978800	Weak transcription	K562	blood
42	chr4:2978200-2978800	Enhancers	HepG2	liver

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