Variant report

Variant	rs7676937
Chromosome Location	chr4:2902565-2902566
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:2902450-2902780	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr4:2902450-2902706	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr4:2902505-2902705	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr4:2902467-2902789	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr4:2902387-2902943	K562	blood:	n/a	n/a
6	STAT3	chr4:2902526-2902661	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:2901620..2903390-chr4:2929996..2931803,2	MCF-7	breast:
2	chr4:2794368..2797381-chr4:2901324..2903887,3	MCF-7	breast:
3	chr4:2883697..2886623-chr4:2900900..2904831,4	MCF-7	breast:
4	chr4:2901261..2903208-chr4:2909740..2911464,2	MCF-7	breast:
5	chr4:2900149..2902689-chr4:2931088..2933616,2	MCF-7	breast:
6	chr4:2892098..2895386-chr4:2900898..2904479,3	K562	blood:

Variant related genes	Relation type
ADD1	TF binding region
ENSG00000109736	Chromatin interaction
ENSG00000087274	Chromatin interaction
ENSG00000087266	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16843459	1.00[AMR][1000 genomes]
rs16843490	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16843682	1.00[AMR][1000 genomes]
rs35304823	1.00[AMR][1000 genomes]
rs35983864	1.00[AMR][1000 genomes]
rs370470	1.00[YRI][hapmap]
rs55676948	1.00[AMR][1000 genomes]
rs56315133	1.00[AMR][1000 genomes]
rs57551202	1.00[AMR][1000 genomes]
rs57960709	1.00[AMR][1000 genomes]
rs58279895	1.00[AMR][1000 genomes]
rs60514033	1.00[AMR][1000 genomes]
rs60745500	1.00[AMR][1000 genomes]
rs61652297	1.00[AMR][1000 genomes]
rs61747144	1.00[AMR][1000 genomes]
rs6830234	1.00[AMR][1000 genomes]
rs73792109	1.00[AMR][1000 genomes]
rs73792110	1.00[AMR][1000 genomes]
rs73792112	1.00[AMR][1000 genomes]
rs73792115	1.00[AMR][1000 genomes]
rs73792116	1.00[AMR][1000 genomes]
rs73794816	1.00[AMR][1000 genomes]
rs73794824	1.00[AMR][1000 genomes]
rs73794825	1.00[AMR][1000 genomes]
rs73794827	1.00[AMR][1000 genomes]
rs7657843	1.00[AMR][1000 genomes]
rs7699427	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3419163	chr4:2898554-2904052	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2870200-2914000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:2876600-2919200	Strong transcription	Primary B cells from peripheral blood	blood
3	chr4:2877200-2919400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:2880600-2915000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:2883600-2918600	Strong transcription	Fetal Stomach	stomach
6	chr4:2890400-2918000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:2893000-2907800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:2893000-2919400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:2893200-2907600	Strong transcription	Primary T cells from cord blood	blood
10	chr4:2893200-2907600	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr4:2893200-2914000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:2893200-2918800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr4:2893200-2918800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr4:2893200-2919200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr4:2893200-2932600	Strong transcription	Fetal Thymus	thymus
16	chr4:2893400-2915800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:2893400-2918800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:2893400-2919000	Strong transcription	Fetal Muscle Leg	muscle
19	chr4:2893800-2909200	Strong transcription	Lung	lung
20	chr4:2893800-2918600	Strong transcription	Thymus	Thymus
21	chr4:2893800-2919000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr4:2894000-2902600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:2894000-2903800	Strong transcription	Fetal Intestine Small	intestine
24	chr4:2894000-2923000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:2894400-2907600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr4:2894600-2907600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:2894800-2919800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:2895000-2903200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr4:2895000-2903200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr4:2895000-2903200	Strong transcription	Osteobl	bone
31	chr4:2895000-2907600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr4:2895000-2917800	Strong transcription	Dnd41	blood
33	chr4:2895200-2903200	Strong transcription	Colonic Mucosa	Colon
34	chr4:2895200-2903200	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:2895200-2907800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr4:2895200-2915000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:2895200-2919000	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr4:2895400-2902800	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr4:2895400-2903000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr4:2895400-2903200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr4:2895400-2903600	Strong transcription	Fetal Intestine Large	intestine
42	chr4:2895400-2907800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:2895400-2908200	Strong transcription	HepG2	liver
44	chr4:2895400-2913000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr4:2895400-2915200	Strong transcription	Placenta	Placenta
46	chr4:2895400-2916200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr4:2895400-2919000	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:2895600-2903400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:2895600-2905400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:2895600-2914000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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