Variant report

Variant	rs7658148
Chromosome Location	chr4:174235624-174235625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13103748	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1383628	0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2127896	0.88[CEU][hapmap]
rs4323082	0.88[CEU][hapmap]
rs6825703	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6832850	0.88[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7658148	SCRG1	cis	parietal	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
2	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:174210600-174240200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:174210800-174236200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:174213600-174237200	Weak transcription	NHEK	skin
9	chr4:174215000-174239400	Weak transcription	HUVEC	blood vessel
10	chr4:174215200-174236000	Weak transcription	Aorta	Aorta
11	chr4:174215200-174239600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:174215200-174249600	Weak transcription	Left Ventricle	heart
13	chr4:174215200-174254000	Weak transcription	Psoas Muscle	Psoas
14	chr4:174217200-174236000	Weak transcription	Stomach Mucosa	stomach
15	chr4:174217600-174253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:174220600-174236200	Weak transcription	Brain Substantia Nigra	brain
17	chr4:174222400-174246800	Weak transcription	Fetal Lung	lung
18	chr4:174222800-174240200	Weak transcription	NHLF	lung
19	chr4:174222800-174253000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:174223200-174239600	Weak transcription	Osteobl	bone
21	chr4:174223200-174240200	Weak transcription	HSMMtube	muscle
22	chr4:174223400-174239600	Weak transcription	NHDF-Ad	bronchial
23	chr4:174223400-174239800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:174223400-174250600	Strong transcription	Dnd41	blood
25	chr4:174223400-174251600	Strong transcription	Fetal Thymus	thymus
26	chr4:174223600-174250400	Weak transcription	Hela-S3	cervix
27	chr4:174224400-174238000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr4:174225000-174239800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr4:174225200-174250800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr4:174226800-174242200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:174227000-174238400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:174227000-174239600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:174227000-174239800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:174227200-174238800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:174227800-174236600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:174228000-174239000	Strong transcription	Thymus	Thymus
37	chr4:174228800-174236000	Weak transcription	Lung	lung
38	chr4:174229000-174249200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:174229200-174237400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:174229200-174251400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:174229200-174252400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:174229200-174253200	Weak transcription	Small Intestine	intestine
43	chr4:174229400-174236000	Weak transcription	Gastric	stomach
44	chr4:174229800-174247600	Weak transcription	NH-A	brain
45	chr4:174230200-174239400	Strong transcription	Primary B cells from cord blood	blood
46	chr4:174230400-174239000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:174230800-174239600	Weak transcription	Fetal Heart	heart
48	chr4:174230800-174249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:174231000-174239600	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr4:174231200-174240000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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