Variant report

Variant	rs1383628
Chromosome Location	chr4:174194453-174194454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174192014..174194666-chr4:174199386..174201748,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1008052	0.85[JPT][hapmap]
rs10213525	0.90[JPT][hapmap]
rs13103748	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13128039	0.83[CEU][hapmap]
rs17059221	0.95[JPT][hapmap]
rs4323082	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs4535319	0.90[JPT][hapmap]
rs56190041	0.81[EUR][1000 genomes]
rs6825703	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6832850	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs7658148	0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9683937	0.90[JPT][hapmap]
rs9685946	0.90[JPT][hapmap]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174171400-174202600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:174173600-174202200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:174174600-174195800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:174177600-174197800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:174186200-174196000	Weak transcription	GM12878-XiMat	blood
7	chr4:174186400-174194800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:174186400-174196000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:174186400-174196000	Weak transcription	Aorta	Aorta
10	chr4:174186400-174196000	Weak transcription	Fetal Intestine Large	intestine
11	chr4:174186400-174196000	Weak transcription	Gastric	stomach
12	chr4:174186400-174196000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:174186400-174198600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:174186400-174208600	Weak transcription	Esophagus	oesophagus
15	chr4:174186600-174196000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:174186600-174206800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:174186600-174207000	Weak transcription	Ovary	ovary
18	chr4:174186600-174207000	Weak transcription	Small Intestine	intestine
19	chr4:174186600-174209800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:174186800-174203600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:174187200-174194600	Weak transcription	K562	blood
22	chr4:174187400-174202400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:174188800-174194600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:174188800-174195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:174189400-174196000	Weak transcription	Primary T cells from cord blood	blood
26	chr4:174189600-174194600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr4:174190600-174195200	Enhancers	Fetal Lung	lung
28	chr4:174190800-174196000	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:174191800-174204600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:174191800-174205000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:174192000-174196000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:174192200-174196000	Weak transcription	Thymus	Thymus
33	chr4:174192200-174198800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:174192200-174205000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:174192800-174199600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:174193200-174200400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:174193400-174195200	Enhancers	NHLF	lung
38	chr4:174193400-174195600	Enhancers	NHDF-Ad	bronchial
39	chr4:174193400-174196800	Strong transcription	Dnd41	blood
40	chr4:174193800-174195000	Strong transcription	Primary B cells from cord blood	blood
41	chr4:174194000-174194800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr4:174194000-174195200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:174194000-174196000	Strong transcription	Fetal Thymus	thymus
44	chr4:174194200-174194600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:174194200-174194600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:174194200-174195000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:174194200-174195200	Enhancers	Stomach Mucosa	stomach
48	chr4:174194200-174196600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr4:174194400-174194600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:174194400-174194800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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