Variant report

Variant	rs4535319
Chromosome Location	chr4:174127031-174127032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174124063..174127246-chr4:174130049..174132075,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10001613	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs1008052	0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10213525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731263	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112928	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs1383628	0.90[JPT][hapmap]
rs17059221	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332655	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs28377337	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28451250	0.86[ASN][1000 genomes]
rs28477861	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28663544	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28769285	0.81[AMR][1000 genomes]
rs60815517	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6817013	0.87[ASN][1000 genomes]
rs6832850	0.81[JPT][hapmap]
rs6843769	0.80[CHB][hapmap]
rs72711045	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683937	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685946	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9999740	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174104000-174157200	Weak transcription	Ovary	ovary
2	chr4:174112600-174131200	Weak transcription	Colonic Mucosa	Colon
3	chr4:174112800-174140000	Weak transcription	Aorta	Aorta
4	chr4:174113400-174132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:174113800-174138000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:174114000-174130800	Weak transcription	Brain Substantia Nigra	brain
7	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:174114600-174155000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:174115200-174127200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:174116800-174135200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:174117000-174127800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:174117000-174130800	Weak transcription	Brain Angular Gyrus	brain
13	chr4:174120400-174131200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:174120800-174127200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:174122000-174132600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:174122200-174130800	Weak transcription	HUVEC	blood vessel
17	chr4:174123000-174130400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:174123600-174130600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:174123600-174174200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:174123800-174129600	Weak transcription	K562	blood
21	chr4:174124000-174130600	Weak transcription	Stomach Mucosa	stomach
22	chr4:174124800-174131800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:174125400-174127200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr4:174125400-174127200	Weak transcription	Small Intestine	intestine
25	chr4:174125600-174127200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:174125600-174130400	Weak transcription	Right Ventricle	heart
27	chr4:174125600-174144800	Weak transcription	Primary B cells from cord blood	blood
28	chr4:174125800-174128200	Strong transcription	Primary T cells from cord blood	blood
29	chr4:174125800-174132400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:174125800-174132400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr4:174125800-174139200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr4:174126000-174127400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:174126000-174127400	Genic enhancers	Thymus	Thymus
34	chr4:174126000-174156400	Weak transcription	Brain Anterior Caudate	brain
35	chr4:174126200-174127200	Genic enhancers	Pancreas	Pancrea
36	chr4:174126200-174127400	ZNF genes & repeats	Fetal Stomach	stomach
37	chr4:174126200-174127400	ZNF genes & repeats	Lung	lung
38	chr4:174126400-174127200	Enhancers	Gastric	stomach
39	chr4:174126400-174127400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:174126400-174127400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:174126400-174149800	Weak transcription	Esophagus	oesophagus
42	chr4:174126600-174127200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:174126600-174127200	Strong transcription	Fetal Intestine Small	intestine
44	chr4:174126600-174127400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr4:174126600-174127600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:174126600-174127800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr4:174126600-174130400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:174126600-174130800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr4:174126600-174131400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr4:174126600-174132200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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