Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:174071309..174073800-chr4:174089324..174091660,2	MCF-7	breast:
2	chr4:174072073..174074614-chr4:174076113..174077879,2	K562	blood:
3	chr4:174072381..174074317-chr4:174086673..174089260,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGB2-9	chr4:174071424-174074003	NONHSAT099222

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10008279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026318	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1006002	0.84[JPT][hapmap]
rs1006003	0.89[JPT][hapmap]
rs1008052	0.85[CHB][hapmap]
rs10213525	0.85[CHB][hapmap]
rs1054496	0.84[JPT][hapmap]
rs1054497	0.84[JPT][hapmap]
rs11734882	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17322564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332655	0.84[JPT][hapmap]
rs28464511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28617596	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718838	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4048412	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4377567	0.84[JPT][hapmap]
rs4535319	0.80[CHB][hapmap]
rs6822683	0.89[ASN][1000 genomes]
rs6822875	0.89[ASN][1000 genomes]
rs7375552	0.98[ASN][1000 genomes]
rs7657374	0.87[ASN][1000 genomes]
rs9683937	0.80[CHB][hapmap]
rs9685946	0.85[CHB][hapmap]
rs9999491	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174047000-174079000	Weak transcription	Fetal Thymus	thymus
2	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
3	chr4:174065200-174087200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:174065400-174083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:174066800-174089000	Weak transcription	HSMM	muscle
7	chr4:174069200-174088800	Weak transcription	HMEC	breast
8	chr4:174071400-174073400	Weak transcription	Aorta	Aorta
9	chr4:174071800-174073800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:174071800-174080800	Weak transcription	Primary B cells from cord blood	blood
11	chr4:174072000-174077000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:174072000-174081000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach

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