Variant report

Variant	rs6822683
Chromosome Location	chr4:174063974-174063975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174063680..174066835-chr4:174072765..174075948,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10008279	0.89[ASN][1000 genomes]
rs10011724	0.84[ASN][1000 genomes]
rs10012395	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10026318	0.89[ASN][1000 genomes]
rs10027708	0.86[ASN][1000 genomes]
rs10031414	0.84[ASN][1000 genomes]
rs1006002	0.90[CHB][hapmap];0.80[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1006003	0.90[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1008052	0.80[CHB][hapmap]
rs10520252	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1054496	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs1054497	0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs11734882	0.89[ASN][1000 genomes]
rs1316411	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17322564	0.89[ASN][1000 genomes]
rs1991727	0.87[GIH][hapmap];0.89[JPT][hapmap]
rs2332654	0.84[ASN][1000 genomes]
rs2332655	0.90[CHB][hapmap];0.80[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2332669	0.89[JPT][hapmap]
rs28464511	0.89[ASN][1000 genomes]
rs28477433	0.84[ASN][1000 genomes]
rs28612521	0.84[ASN][1000 genomes]
rs28617596	0.89[ASN][1000 genomes]
rs28701033	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28718838	0.89[ASN][1000 genomes]
rs2877748	0.87[GIH][hapmap]
rs3733477	0.82[ASN][1000 genomes]
rs4048412	0.87[ASN][1000 genomes]
rs4377567	0.85[CHB][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs4419455	0.92[GIH][hapmap];0.81[TSI][hapmap]
rs4643788	0.83[ASN][1000 genomes]
rs4695826	0.84[ASN][1000 genomes]
rs6553678	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6553679	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6553680	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6822875	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835098	0.84[ASN][1000 genomes]
rs6843769	0.85[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs716357	0.80[EUR][1000 genomes]
rs7375552	0.87[ASN][1000 genomes]
rs7657374	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7672108	0.82[GIH][hapmap];0.89[JPT][hapmap]
rs9990666	0.88[ASN][1000 genomes]
rs9999491	0.89[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174042600-174069000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:174047000-174079000	Weak transcription	Fetal Thymus	thymus
3	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
4	chr4:174060000-174066000	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:174062200-174064800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:174063400-174064400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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