Variant report

Variant	rs7672108
Chromosome Location	chr4:174165126-174165127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174088317..174092756-chr4:174164502..174169334,5	K562	blood:
2	chr4:174163471..174166786-chr4:174169920..174173418,4	MCF-7	breast:
3	chr4:174163460..174165602-chr4:174169052..174171216,2	K562	blood:
4	chr4:174162885..174166050-chr4:174167322..174169124,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10011724	0.86[EUR][1000 genomes]
rs10027708	0.85[EUR][1000 genomes]
rs10031414	0.86[EUR][1000 genomes]
rs1006002	0.94[JPT][hapmap]
rs1006003	0.94[JPT][hapmap]
rs1054496	0.86[CEU][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs1054497	0.86[CEU][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs11737748	0.95[CEU][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs12503879	0.86[EUR][1000 genomes]
rs12503939	0.98[EUR][1000 genomes]
rs12639929	1.00[CEU][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs12644699	1.00[CEU][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs13111572	0.99[EUR][1000 genomes]
rs13125240	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs13138282	0.94[EUR][1000 genomes]
rs1574314	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs17322893	0.95[CEU][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs1991727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2078475	0.90[EUR][1000 genomes]
rs2332654	0.86[EUR][1000 genomes]
rs2332655	0.94[JPT][hapmap]
rs2332668	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2332669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28477433	0.86[EUR][1000 genomes]
rs28612521	0.86[EUR][1000 genomes]
rs28709762	0.85[EUR][1000 genomes]
rs2877748	0.91[CEU][hapmap];0.90[GIH][hapmap];0.80[TSI][hapmap];0.89[EUR][1000 genomes]
rs3733477	0.88[EUR][1000 genomes]
rs4377567	0.82[CEU][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs4419455	0.85[GIH][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs4561909	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs4643788	0.85[EUR][1000 genomes]
rs4695826	0.86[EUR][1000 genomes]
rs6814857	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs6826412	0.89[EUR][1000 genomes]
rs6835098	0.86[EUR][1000 genomes]
rs6851632	0.89[EUR][1000 genomes]
rs7671278	0.87[EUR][1000 genomes]
rs9990666	0.85[EUR][1000 genomes]
rs9997477	0.91[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174123600-174174200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr4:174128200-174169200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:174131800-174168600	Weak transcription	Gastric	stomach
4	chr4:174142200-174173400	Weak transcription	Lung	lung
5	chr4:174144200-174169000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:174148000-174173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:174150200-174173400	Weak transcription	Small Intestine	intestine
8	chr4:174151400-174171000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:174152600-174173400	Weak transcription	Left Ventricle	heart
10	chr4:174153000-174169200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:174153600-174171000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:174156600-174169000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:174156800-174169000	Weak transcription	Fetal Intestine Small	intestine
14	chr4:174157000-174166800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:174157400-174166600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:174157400-174171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:174158000-174169000	Weak transcription	Fetal Stomach	stomach
18	chr4:174158000-174169200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:174158200-174172600	Weak transcription	K562	blood
20	chr4:174158600-174173000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr4:174158800-174172200	Weak transcription	Brain Substantia Nigra	brain
22	chr4:174159200-174165200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:174159200-174172600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:174159200-174172600	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:174159200-174175200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:174159600-174189000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:174159800-174169200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:174160800-174172400	Weak transcription	Brain Anterior Caudate	brain
30	chr4:174160800-174172600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:174162000-174168800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr4:174162000-174169400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr4:174162600-174166200	Enhancers	Fetal Thymus	thymus
34	chr4:174163000-174166000	Enhancers	HSMM	muscle
35	chr4:174163000-174168600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr4:174163200-174166800	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr4:174163200-174168200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:174163400-174165600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:174163400-174166000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr4:174163400-174168400	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr4:174163600-174165200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:174163600-174165200	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr4:174163600-174165400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:174163600-174165400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:174163600-174165400	Enhancers	HMEC	breast
46	chr4:174163600-174165600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:174163600-174165600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:174163600-174165800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr4:174163600-174166000	Enhancers	H1 Cell Line	embryonic stem cell
50	chr4:174163600-174166200	Enhancers	H9 Cell Line	embryonic stem cell

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