Variant report

Variant	rs6851632
Chromosome Location	chr4:174109611-174109612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174102486..174104486-chr4:174109013..174111128,2	K562	blood:
2	chr4:174107114..174109913-chr4:174122414..174125175,2	K562	blood:
3	chr4:174087944..174091003-chr4:174108604..174112195,4	K562	blood:

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10001613	0.93[ASN][1000 genomes]
rs10011724	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10012395	0.81[ASN][1000 genomes]
rs10027708	0.91[EUR][1000 genomes]
rs10031414	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10520252	0.81[ASN][1000 genomes]
rs1054496	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1054497	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11737748	0.96[EUR][1000 genomes]
rs12503939	0.88[EUR][1000 genomes]
rs12639929	0.88[EUR][1000 genomes]
rs12644699	0.91[EUR][1000 genomes]
rs13111572	0.89[EUR][1000 genomes]
rs13125240	0.89[EUR][1000 genomes]
rs13138282	0.96[EUR][1000 genomes]
rs1574314	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17322893	0.96[EUR][1000 genomes]
rs1991727	0.89[EUR][1000 genomes]
rs2078475	0.97[EUR][1000 genomes]
rs2332654	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2332669	0.89[EUR][1000 genomes]
rs28477433	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28612521	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28701033	0.81[ASN][1000 genomes]
rs28709762	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2877748	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733477	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4377567	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4419455	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4561909	0.92[EUR][1000 genomes]
rs4643788	0.91[EUR][1000 genomes]
rs4695826	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6553679	0.81[ASN][1000 genomes]
rs6553680	0.81[ASN][1000 genomes]
rs6814857	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6826412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835098	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7671278	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7672108	0.89[EUR][1000 genomes]
rs9990666	0.91[EUR][1000 genomes]
rs9997477	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174091600-174113600	Weak transcription	Esophagus	oesophagus
2	chr4:174093600-174109800	Weak transcription	Gastric	stomach
3	chr4:174096200-174111200	Weak transcription	Small Intestine	intestine
4	chr4:174099200-174111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:174100000-174112200	Weak transcription	Brain Substantia Nigra	brain
6	chr4:174104000-174112400	Weak transcription	Aorta	Aorta
7	chr4:174104000-174112400	Weak transcription	Brain Anterior Caudate	brain
8	chr4:174104000-174112600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:174104000-174157200	Weak transcription	Ovary	ovary
10	chr4:174104200-174112200	Weak transcription	Hela-S3	cervix
11	chr4:174104600-174110000	Weak transcription	HSMMtube	muscle
12	chr4:174104600-174112600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:174105000-174116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:174105200-174110600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:174105800-174109800	Enhancers	Fetal Intestine Small	intestine
16	chr4:174106000-174110200	Enhancers	Fetal Intestine Large	intestine
17	chr4:174106600-174114200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:174106800-174112000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr4:174107000-174112200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:174107000-174117800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:174107200-174112000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr4:174107200-174112200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:174107400-174112200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:174107400-174120800	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:174107600-174110400	Enhancers	A549	lung
26	chr4:174107600-174112000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:174107600-174112000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr4:174107600-174112200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:174107600-174112600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr4:174107600-174115400	Weak transcription	Primary B cells from cord blood	blood
31	chr4:174107600-174115400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr4:174107800-174110400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:174107800-174112400	Weak transcription	Primary T cells from cord blood	blood
34	chr4:174107800-174116200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr4:174108000-174110000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr4:174108000-174110200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:174108000-174110200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr4:174108000-174110400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:174108000-174112000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr4:174108000-174112000	Weak transcription	Brain Hippocampus Middle	brain
41	chr4:174108000-174112000	Weak transcription	HUVEC	blood vessel
42	chr4:174108000-174112800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:174108000-174113800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr4:174108200-174109800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr4:174108600-174110800	Enhancers	Osteobl	bone
46	chr4:174108600-174114200	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr4:174108800-174110000	Enhancers	Duodenum Mucosa	Duodenum
48	chr4:174108800-174110400	Enhancers	NH-A	brain
49	chr4:174108800-174126800	Weak transcription	Spleen	Spleen
50	chr4:174109000-174111800	Enhancers	Stomach Mucosa	stomach

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