Variant report

Variant	rs4561909
Chromosome Location	chr4:174086937-174086938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174046313..174049132-chr4:174086110..174088705,2	K562	blood:
2	chr4:174080786..174083422-chr4:174084267..174087179,3	MCF-7	breast:
3	chr4:174072381..174074317-chr4:174086673..174089260,2	K562	blood:
4	chr4:174084331..174086204-chr4:174086936..174089803,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10011724	0.99[EUR][1000 genomes]
rs10027708	0.97[EUR][1000 genomes]
rs10031414	0.99[EUR][1000 genomes]
rs1054496	1.00[CEU][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes]
rs1054497	1.00[CEU][hapmap];0.82[GIH][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes]
rs11737748	0.91[ASW][hapmap];0.91[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12503939	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12639929	0.91[ASW][hapmap];0.86[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12644699	0.83[ASW][hapmap];0.86[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13111572	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13125240	0.86[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13138282	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1574314	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs17322893	0.91[ASW][hapmap];0.91[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1991727	0.86[CEU][hapmap];0.84[GIH][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs2078475	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2332654	0.99[EUR][1000 genomes]
rs2332669	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs28477433	0.99[EUR][1000 genomes]
rs28612521	0.99[EUR][1000 genomes]
rs28709762	0.90[EUR][1000 genomes]
rs2877748	0.95[CEU][hapmap];0.84[GIH][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs3733477	0.97[EUR][1000 genomes]
rs4377567	0.95[CEU][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs4419455	0.91[CEU][hapmap];0.84[GIH][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs4643788	0.97[EUR][1000 genomes]
rs4695826	0.99[EUR][1000 genomes]
rs6814857	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6826412	0.92[EUR][1000 genomes]
rs6835098	0.99[EUR][1000 genomes]
rs6851632	0.92[EUR][1000 genomes]
rs7671278	0.93[EUR][1000 genomes]
rs7672108	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs9990666	0.97[EUR][1000 genomes]
rs9997477	0.95[CEU][hapmap];0.93[EUR][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174065200-174087200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:174066800-174089000	Weak transcription	HSMM	muscle
4	chr4:174069200-174088800	Weak transcription	HMEC	breast
5	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach
6	chr4:174073600-174089000	Weak transcription	Pancreas	Pancrea
7	chr4:174073600-174089200	Weak transcription	Aorta	Aorta
8	chr4:174073800-174089000	Weak transcription	NHLF	lung
9	chr4:174074600-174088800	Weak transcription	Fetal Intestine Small	intestine
10	chr4:174075400-174088600	Weak transcription	Fetal Intestine Large	intestine
11	chr4:174075800-174088800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:174076400-174088400	Weak transcription	Primary T cells from cord blood	blood
13	chr4:174077200-174088800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr4:174077800-174089000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:174078400-174088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:174079600-174087000	Weak transcription	Dnd41	blood
17	chr4:174079600-174087800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:174079600-174088800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:174080000-174089000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:174081000-174087200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr4:174081000-174088200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:174081000-174088400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:174081000-174088800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:174081000-174089000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:174081200-174089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:174082200-174088800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr4:174082600-174087000	Weak transcription	A549	lung
28	chr4:174082800-174088000	Weak transcription	K562	blood
29	chr4:174083400-174089000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr4:174083600-174089000	Weak transcription	Brain Substantia Nigra	brain
31	chr4:174083800-174089000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr4:174084000-174087400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:174084000-174088800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:174084200-174089000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:174084400-174087400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:174084400-174087400	Strong transcription	Primary B cells from cord blood	blood
37	chr4:174084400-174088000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:174084400-174089000	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:174084800-174088800	Weak transcription	Fetal Heart	heart
40	chr4:174084800-174089000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr4:174085000-174088800	Weak transcription	Brain Anterior Caudate	brain
42	chr4:174085000-174088800	Weak transcription	NHEK	skin
43	chr4:174085200-174087200	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:174085200-174089000	Weak transcription	Adipose Nuclei	Adipose
45	chr4:174085200-174089000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr4:174085400-174088000	Strong transcription	Fetal Muscle Leg	muscle
47	chr4:174085400-174088800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr4:174085400-174088800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:174085400-174089000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr4:174085600-174088800	Weak transcription	Fetal Lung	lung

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