Variant report

Variant	rs11737748
Chromosome Location	chr4:174130503-174130504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174088960..174091992-chr4:174129910..174133714,4	MCF-7	breast:
2	chr4:174127986..174130825-chr4:174186353..174187910,2	K562	blood:
3	chr4:173791475..173792294-chr4:174130337..174130842,2	MCF-7	breast:
4	chr4:174121153..174123700-chr4:174130402..174133173,2	K562	blood:
5	chr4:174124063..174127246-chr4:174130049..174132075,3	K562	blood:

Variant related genes	Relation type
ENSG00000245213	Chromatin interaction
ENSG00000109586	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10011724	0.90[EUR][1000 genomes]
rs10027708	0.88[EUR][1000 genomes]
rs10031414	0.90[EUR][1000 genomes]
rs1054496	0.91[CEU][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs1054497	0.91[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs12503879	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12503914	0.88[ASN][1000 genomes]
rs12503939	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639929	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12644699	0.91[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111572	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13125240	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13138282	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1574314	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs17322893	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17323530	0.91[CHB][hapmap];0.82[CHD][hapmap];0.84[ASN][1000 genomes]
rs1991727	0.95[CEU][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2078475	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332654	0.90[EUR][1000 genomes]
rs2332668	0.81[EUR][1000 genomes]
rs2332669	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs28477433	0.90[EUR][1000 genomes]
rs28612521	0.90[EUR][1000 genomes]
rs28709762	0.88[EUR][1000 genomes]
rs2877748	0.95[CEU][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]
rs3733477	0.92[EUR][1000 genomes]
rs4377567	0.87[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs4419455	0.82[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs4561909	0.91[ASW][hapmap];0.91[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4643788	0.88[EUR][1000 genomes]
rs4695826	0.89[EUR][1000 genomes]
rs6814857	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs6826412	0.96[EUR][1000 genomes]
rs6835098	0.90[EUR][1000 genomes]
rs6851632	0.96[EUR][1000 genomes]
rs7671278	0.92[EUR][1000 genomes]
rs7672108	0.95[CEU][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs9990666	0.88[EUR][1000 genomes]
rs9997477	0.95[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv518900	chr4:174130503-174142874	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174104000-174157200	Weak transcription	Ovary	ovary
2	chr4:174112600-174131200	Weak transcription	Colonic Mucosa	Colon
3	chr4:174112800-174140000	Weak transcription	Aorta	Aorta
4	chr4:174113400-174132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:174113800-174138000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:174114000-174130800	Weak transcription	Brain Substantia Nigra	brain
7	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:174114600-174155000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:174116800-174135200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:174117000-174130800	Weak transcription	Brain Angular Gyrus	brain
11	chr4:174120400-174131200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:174122000-174132600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:174122200-174130800	Weak transcription	HUVEC	blood vessel
14	chr4:174123600-174130600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:174123600-174174200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:174124000-174130600	Weak transcription	Stomach Mucosa	stomach
17	chr4:174124800-174131800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:174125600-174144800	Weak transcription	Primary B cells from cord blood	blood
19	chr4:174125800-174132400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:174125800-174132400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:174125800-174139200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr4:174126000-174156400	Weak transcription	Brain Anterior Caudate	brain
23	chr4:174126400-174149800	Weak transcription	Esophagus	oesophagus
24	chr4:174126600-174130800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr4:174126600-174131400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:174126600-174132200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:174126600-174132400	Weak transcription	Fetal Intestine Large	intestine
28	chr4:174126600-174132400	Weak transcription	HSMM	muscle
29	chr4:174126600-174133400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:174126600-174135400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:174126600-174135800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:174126600-174155200	Weak transcription	GM12878-XiMat	blood
33	chr4:174126600-174163400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:174126800-174135600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:174126800-174139000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr4:174127000-174131000	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:174127000-174132000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr4:174127000-174139600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:174127000-174148600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr4:174127000-174163600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr4:174127000-174163600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:174127200-174130600	Weak transcription	Gastric	stomach
43	chr4:174127200-174130600	Weak transcription	Pancreas	Pancrea
44	chr4:174127200-174130800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr4:174127200-174131000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr4:174127200-174131000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr4:174127400-174130800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:174127400-174130800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr4:174127400-174130800	Weak transcription	Lung	lung
50	chr4:174127400-174131000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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