Variant report

Variant	rs9990666
Chromosome Location	chr4:174083150-174083151
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174079151..174082444-chr4:174082642..174085459,3	MCF-7	breast:
2	chr4:174080786..174083422-chr4:174084267..174087179,3	MCF-7	breast:
3	chr4:174081406..174084218-chr4:174087766..174090685,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245213	Chromatin interaction
ENSG00000109586	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10011724	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10027708	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10031414	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1006002	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1006003	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1054496	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1054497	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11737748	0.88[EUR][1000 genomes]
rs12503939	0.83[EUR][1000 genomes]
rs12639929	0.84[EUR][1000 genomes]
rs12644699	0.86[EUR][1000 genomes]
rs13111572	0.84[EUR][1000 genomes]
rs13125240	0.84[EUR][1000 genomes]
rs13138282	0.88[EUR][1000 genomes]
rs1574314	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17322893	0.88[EUR][1000 genomes]
rs1991727	0.84[EUR][1000 genomes]
rs2078475	0.94[EUR][1000 genomes]
rs2332654	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332655	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2332669	0.84[EUR][1000 genomes]
rs28477433	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28612521	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28709762	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2877748	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3733477	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4377567	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4419455	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4561909	0.97[EUR][1000 genomes]
rs4643788	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4695826	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6814857	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6822683	0.88[ASN][1000 genomes]
rs6822875	0.88[ASN][1000 genomes]
rs6826412	0.91[EUR][1000 genomes]
rs6835098	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6851632	0.91[EUR][1000 genomes]
rs7657374	0.86[ASN][1000 genomes]
rs7671278	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7672108	0.85[EUR][1000 genomes]
rs9997477	0.92[EUR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
2	chr4:174065200-174087200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:174065400-174083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:174066800-174089000	Weak transcription	HSMM	muscle
6	chr4:174069200-174088800	Weak transcription	HMEC	breast
7	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach
8	chr4:174073000-174085400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:174073600-174089000	Weak transcription	Pancreas	Pancrea
10	chr4:174073600-174089200	Weak transcription	Aorta	Aorta
11	chr4:174073800-174089000	Weak transcription	NHLF	lung
12	chr4:174074200-174083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:174074600-174088800	Weak transcription	Fetal Intestine Small	intestine
14	chr4:174075400-174088600	Weak transcription	Fetal Intestine Large	intestine
15	chr4:174075800-174088800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:174076400-174088400	Weak transcription	Primary T cells from cord blood	blood
17	chr4:174076800-174086000	Weak transcription	HUVEC	blood vessel
18	chr4:174077200-174085600	Weak transcription	GM12878-XiMat	blood
19	chr4:174077200-174088800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr4:174077600-174083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:174077600-174085600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr4:174077800-174089000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:174078200-174084400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:174078400-174088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:174079600-174087000	Weak transcription	Dnd41	blood
26	chr4:174079600-174087800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:174079600-174088800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:174080000-174084400	Weak transcription	Fetal Thymus	thymus
29	chr4:174080000-174089000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:174081000-174087200	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr4:174081000-174088200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr4:174081000-174088400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr4:174081000-174088800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr4:174081000-174089000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:174081200-174084000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:174081200-174084400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr4:174081200-174085200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr4:174081200-174085400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:174081200-174089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:174082200-174086000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:174082200-174088800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr4:174082400-174084400	Weak transcription	Primary B cells from cord blood	blood
43	chr4:174082600-174087000	Weak transcription	A549	lung
44	chr4:174082800-174084400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:174082800-174086200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:174082800-174088000	Weak transcription	K562	blood

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