Variant report

Variant	rs28701033
Chromosome Location	chr4:174079376-174079377
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174079151..174082444-chr4:174082642..174085459,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10012395	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520252	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316411	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1574314	0.81[ASN][1000 genomes]
rs2877748	0.81[ASN][1000 genomes]
rs4419455	0.86[ASN][1000 genomes]
rs6553678	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6553679	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553680	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814857	0.87[ASN][1000 genomes]
rs6822683	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6822875	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6826412	0.81[ASN][1000 genomes]
rs6851632	0.81[ASN][1000 genomes]
rs7657374	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7671278	0.85[ASN][1000 genomes]
rs9997477	0.81[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
2	chr4:174065200-174087200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:174065400-174083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:174066800-174089000	Weak transcription	HSMM	muscle
6	chr4:174069200-174088800	Weak transcription	HMEC	breast
7	chr4:174071800-174080800	Weak transcription	Primary B cells from cord blood	blood
8	chr4:174072000-174081000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach
10	chr4:174073000-174085400	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:174073600-174089000	Weak transcription	Pancreas	Pancrea
12	chr4:174073600-174089200	Weak transcription	Aorta	Aorta
13	chr4:174073800-174089000	Weak transcription	NHLF	lung
14	chr4:174074200-174083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:174074600-174088800	Weak transcription	Fetal Intestine Small	intestine
16	chr4:174075400-174088600	Weak transcription	Fetal Intestine Large	intestine
17	chr4:174075800-174088800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr4:174076400-174088400	Weak transcription	Primary T cells from cord blood	blood
19	chr4:174076800-174086000	Weak transcription	HUVEC	blood vessel
20	chr4:174077200-174085600	Weak transcription	GM12878-XiMat	blood
21	chr4:174077200-174088800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:174077400-174079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:174077600-174083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:174077600-174085600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr4:174077800-174080800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:174077800-174089000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr4:174078200-174084400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr4:174078400-174088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:174079000-174080000	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links