Variant report

Variant	rs6553680
Chromosome Location	chr4:174077044-174077045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174072073..174074614-chr4:174076113..174077879,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10001613	0.93[JPT][hapmap]
rs10012395	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520252	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316411	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1574314	0.81[ASN][1000 genomes]
rs28701033	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877748	0.89[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs4419455	0.83[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs6553678	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6553679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814857	0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs6822683	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6822875	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6826412	0.81[ASN][1000 genomes]
rs6851632	0.81[ASN][1000 genomes]
rs7657374	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7671278	0.85[ASN][1000 genomes]
rs9997477	0.83[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174047000-174079000	Weak transcription	Fetal Thymus	thymus
2	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
3	chr4:174065200-174087200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:174065400-174083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:174066800-174089000	Weak transcription	HSMM	muscle
7	chr4:174069200-174088800	Weak transcription	HMEC	breast
8	chr4:174071800-174080800	Weak transcription	Primary B cells from cord blood	blood
9	chr4:174072000-174081000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach
11	chr4:174073000-174085400	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:174073600-174089000	Weak transcription	Pancreas	Pancrea
13	chr4:174073600-174089200	Weak transcription	Aorta	Aorta
14	chr4:174073800-174089000	Weak transcription	NHLF	lung
15	chr4:174074200-174083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:174074600-174088800	Weak transcription	Fetal Intestine Small	intestine
17	chr4:174075400-174088600	Weak transcription	Fetal Intestine Large	intestine
18	chr4:174075800-174088800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:174076400-174088400	Weak transcription	Primary T cells from cord blood	blood
20	chr4:174076800-174086000	Weak transcription	HUVEC	blood vessel
21	chr4:174077000-174078200	Strong transcription	Primary hematopoietic stem cells	blood

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