Variant report

Variant	rs6553678
Chromosome Location	chr4:174064226-174064227
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10012395	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10520252	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1316411	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28701033	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6553679	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6553680	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6822683	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6822875	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7657374	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174042600-174069000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:174047000-174079000	Weak transcription	Fetal Thymus	thymus
3	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
4	chr4:174060000-174066000	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:174062200-174064800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:174063400-174064400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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