Variant report

Variant	rs10520252
Chromosome Location	chr4:174070959-174070960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10001613	0.82[CHD][hapmap];0.93[JPT][hapmap]
rs10012395	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1054496	0.83[TSI][hapmap]
rs1054497	0.87[GIH][hapmap];0.84[TSI][hapmap]
rs1316411	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1574314	0.81[ASN][1000 genomes]
rs1991727	0.90[GIH][hapmap]
rs28701033	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877748	0.86[ASW][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs4377567	0.90[GIH][hapmap];0.84[TSI][hapmap]
rs4419455	0.93[ASW][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.82[LWK][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.86[ASN][1000 genomes]
rs4561909	0.81[TSI][hapmap]
rs6553678	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6553679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553680	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814857	0.83[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs6822683	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6822875	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6826412	0.81[ASN][1000 genomes]
rs6851632	0.81[ASN][1000 genomes]
rs716357	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs7657374	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7671278	0.85[ASN][1000 genomes]
rs9997477	0.88[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174047000-174079000	Weak transcription	Fetal Thymus	thymus
2	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
3	chr4:174065200-174087200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:174065400-174083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:174066800-174089000	Weak transcription	HSMM	muscle
7	chr4:174069200-174088800	Weak transcription	HMEC	breast

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