Variant report

Variant	rs28617596
Chromosome Location	chr4:174076799-174076800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174072073..174074614-chr4:174076113..174077879,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10008279	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026318	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734882	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17322564	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28464511	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718838	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4048412	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6822683	0.89[ASN][1000 genomes]
rs6822875	0.89[ASN][1000 genomes]
rs6843769	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7375552	0.98[ASN][1000 genomes]
rs7657374	0.87[ASN][1000 genomes]
rs9999491	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174047000-174079000	Weak transcription	Fetal Thymus	thymus
2	chr4:174055000-174086000	Weak transcription	Thymus	Thymus
3	chr4:174065200-174087200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:174065400-174083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:174066800-174089000	Weak transcription	HSMM	muscle
7	chr4:174069200-174088800	Weak transcription	HMEC	breast
8	chr4:174071800-174080800	Weak transcription	Primary B cells from cord blood	blood
9	chr4:174072000-174077000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:174072000-174081000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach
12	chr4:174073000-174085400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:174073600-174089000	Weak transcription	Pancreas	Pancrea
14	chr4:174073600-174089200	Weak transcription	Aorta	Aorta
15	chr4:174073800-174089000	Weak transcription	NHLF	lung
16	chr4:174074200-174083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:174074600-174088800	Weak transcription	Fetal Intestine Small	intestine
18	chr4:174075400-174088600	Weak transcription	Fetal Intestine Large	intestine
19	chr4:174075800-174088800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr4:174076400-174076800	Enhancers	HUVEC	blood vessel
21	chr4:174076400-174088400	Weak transcription	Primary T cells from cord blood	blood

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