Variant report

Variant	rs7660412
Chromosome Location	chr4:127687583-127687584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127686781..127688466-chr4:127878771..127880801,2	K562	blood:
2	chr4:127686360..127688227-chr4:127875695..127877283,2	K562	blood:
3	chr4:127678287..127680328-chr4:127686704..127688877,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11098889	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1167192	0.92[ASN][1000 genomes]
rs12054615	0.90[ASN][1000 genomes]
rs12641500	0.81[ASN][1000 genomes]
rs12642270	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12642385	0.83[AMR][1000 genomes]
rs12642562	0.86[ASN][1000 genomes]
rs12642699	0.86[ASN][1000 genomes]
rs12644037	0.83[AMR][1000 genomes]
rs12648195	0.83[AMR][1000 genomes]
rs12649618	0.83[AMR][1000 genomes]
rs12650738	0.93[ASN][1000 genomes]
rs12651202	0.83[AMR][1000 genomes]
rs13145010	0.83[ASN][1000 genomes]
rs13151312	0.92[ASN][1000 genomes]
rs1491136	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1491137	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1491138	0.81[ASN][1000 genomes]
rs1503620	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17011377	0.83[AMR][1000 genomes]
rs17011393	0.83[AMR][1000 genomes]
rs17011398	0.83[AMR][1000 genomes]
rs17011450	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17011452	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17011495	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17011663	0.86[ASN][1000 genomes]
rs2008243	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2047858	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2174183	0.92[ASN][1000 genomes]
rs2654715	0.80[ASN][1000 genomes]
rs28854355	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs313108	0.84[ASN][1000 genomes]
rs313110	0.84[ASN][1000 genomes]
rs313111	0.84[ASN][1000 genomes]
rs313112	0.84[ASN][1000 genomes]
rs313116	0.85[ASN][1000 genomes]
rs4146615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5004421	0.86[ASN][1000 genomes]
rs56654496	0.89[ASN][1000 genomes]
rs56949181	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57259679	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57840308	0.83[AMR][1000 genomes]
rs58743449	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs59019179	1.00[AFR][1000 genomes]
rs59319887	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60412879	0.83[AMR][1000 genomes]
rs61031744	0.91[ASN][1000 genomes]
rs61594384	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61613462	0.91[ASN][1000 genomes]
rs6817065	0.93[ASN][1000 genomes]
rs6840212	1.00[AFR][1000 genomes]
rs6840324	1.00[AFR][1000 genomes]
rs73846080	0.88[ASN][1000 genomes]
rs73846081	0.88[ASN][1000 genomes]
rs73846082	0.88[ASN][1000 genomes]
rs73846083	0.88[ASN][1000 genomes]
rs7679060	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7683495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697724	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1007477	chr4:127561735-127726291	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537244	chr4:127561735-127726291	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879907	chr4:127646765-127709859	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv879908	chr4:127646765-127749390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127683800-127698000	Weak transcription	HMEC	breast
2	chr4:127685200-127698000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:127685600-127693800	Weak transcription	K562	blood
4	chr4:127687000-127688000	Enhancers	Liver	Liver
5	chr4:127687000-127688400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:127687200-127687800	Enhancers	Colon Smooth Muscle	Colon
7	chr4:127687400-127687800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:127687400-127687800	Enhancers	Fetal Lung	lung
9	chr4:127687400-127688200	Enhancers	HUVEC	blood vessel

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