Variant report

Variant	rs17011663
Chromosome Location	chr4:127727550-127727551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127724830..127727787-chr4:127727865..127729451,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10434047	0.82[ASN][1000 genomes]
rs11098903	0.90[AMR][1000 genomes]
rs11098904	0.93[AMR][1000 genomes]
rs12054615	0.94[ASN][1000 genomes]
rs12640034	0.90[AMR][1000 genomes]
rs12641500	0.90[ASN][1000 genomes]
rs12642562	0.96[ASN][1000 genomes]
rs12642699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12642936	0.93[AMR][1000 genomes]
rs12645504	0.88[AMR][1000 genomes]
rs12646183	0.84[AMR][1000 genomes]
rs12648133	0.89[ASN][1000 genomes]
rs12649338	0.93[AMR][1000 genomes]
rs12651411	0.89[ASN][1000 genomes]
rs13130797	0.80[ASN][1000 genomes]
rs1397436	0.84[AMR][1000 genomes]
rs16997936	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16997962	0.84[AMR][1000 genomes]
rs17011495	0.81[ASN][1000 genomes]
rs17011712	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17011820	0.93[AMR][1000 genomes]
rs17011824	0.93[AMR][1000 genomes]
rs17011836	0.93[AMR][1000 genomes]
rs17011894	0.93[AMR][1000 genomes]
rs17011898	0.93[AMR][1000 genomes]
rs1910441	0.82[JPT][hapmap]
rs2047858	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2203012	0.93[AMR][1000 genomes]
rs2391096	0.90[AMR][1000 genomes]
rs56654496	0.91[ASN][1000 genomes]
rs57220017	0.93[AMR][1000 genomes]
rs57259679	0.86[ASN][1000 genomes]
rs58011980	0.88[AMR][1000 genomes]
rs58035425	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58743449	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60210181	0.93[AMR][1000 genomes]
rs60595161	0.89[ASN][1000 genomes]
rs60662614	0.84[AMR][1000 genomes]
rs60715791	0.89[ASN][1000 genomes]
rs61031744	0.93[ASN][1000 genomes]
rs61613462	0.93[ASN][1000 genomes]
rs6833901	0.89[EUR][1000 genomes]
rs6856633	0.93[EUR][1000 genomes]
rs7660412	0.86[ASN][1000 genomes]
rs7683495	0.86[ASN][1000 genomes]
rs7697724	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879908	chr4:127646765-127749390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127716000-127756000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127721800-127728200	Weak transcription	NHEK	skin
3	chr4:127722200-127737800	Weak transcription	K562	blood
4	chr4:127722400-127728200	Weak transcription	Fetal Lung	lung
5	chr4:127722800-127728200	Weak transcription	NHDF-Ad	bronchial
6	chr4:127722800-127728400	Weak transcription	Fetal Brain Male	brain

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