Variant report

Variant	rs2391096
Chromosome Location	chr4:127788863-127788864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11098903	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11098904	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938581	0.86[EUR][1000 genomes]
rs12499264	0.80[ASN][1000 genomes]
rs12640034	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12642699	0.90[AMR][1000 genomes]
rs12642936	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12645504	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12646183	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12649338	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1397436	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16997936	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16997962	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011663	0.90[AMR][1000 genomes]
rs17011712	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011820	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011824	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011836	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011894	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011898	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011980	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1910441	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2047858	0.90[AMR][1000 genomes]
rs2203012	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627370	0.86[EUR][1000 genomes]
rs28721329	0.86[EUR][1000 genomes]
rs57220017	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58011980	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58035425	0.87[AMR][1000 genomes]
rs58838664	0.95[ASN][1000 genomes]
rs60210181	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60662614	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9884714	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127772800-127792000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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