Variant report

Variant	rs12645504
Chromosome Location	chr4:127894279-127894280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127894144..127897160-chr4:127898666..127901470,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11098903	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11098904	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938581	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12640034	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12642699	0.88[AMR][1000 genomes]
rs12642936	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12646183	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12649338	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1397436	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16997936	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16997962	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17011663	0.88[AMR][1000 genomes]
rs17011712	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011820	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011824	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011836	1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011894	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17011898	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17011980	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17011996	0.89[ASN][1000 genomes]
rs17012000	0.89[ASN][1000 genomes]
rs2047858	0.88[AMR][1000 genomes]
rs2203012	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391096	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627370	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28721329	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57220017	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58011980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58035425	0.85[AMR][1000 genomes]
rs60210181	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60662614	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9884714	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127891200-127898200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:127892600-127898600	Weak transcription	K562	blood
3	chr4:127894200-127895400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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