Variant report

Variant	rs17011980
Chromosome Location	chr4:127925055-127925056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127924575..127927200-chr4:127938335..127939945,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11098903	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11098904	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936668	0.80[ASN][1000 genomes]
rs11938581	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12640034	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12641850	0.85[ASN][1000 genomes]
rs12642936	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12644202	0.83[ASN][1000 genomes]
rs12645504	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12646183	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12647371	0.82[ASN][1000 genomes]
rs12649338	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1397435	0.82[ASN][1000 genomes]
rs1397436	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1510683	0.81[ASN][1000 genomes]
rs1567490	0.81[ASN][1000 genomes]
rs16997936	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16997962	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17011712	0.93[EUR][1000 genomes]
rs17011820	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011824	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17011836	0.94[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17011894	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17011898	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17011996	0.96[ASN][1000 genomes]
rs17012000	0.96[ASN][1000 genomes]
rs17012020	0.85[ASN][1000 genomes]
rs17012036	0.85[ASN][1000 genomes]
rs17012038	0.85[ASN][1000 genomes]
rs2203012	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2391096	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2391122	0.80[ASN][1000 genomes]
rs28627370	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28721329	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36096326	0.81[ASN][1000 genomes]
rs4834162	0.82[ASN][1000 genomes]
rs56822169	0.85[ASN][1000 genomes]
rs57220017	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58011980	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60210181	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60662614	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6834341	0.80[ASN][1000 genomes]
rs9884714	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127923800-127927200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:127924000-127926600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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