Variant report

Variant	rs4834162
Chromosome Location	chr4:127925448-127925449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127924575..127927200-chr4:127938335..127939945,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10022263	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11936668	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12507548	0.85[ASN][1000 genomes]
rs12647371	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147915	0.89[EUR][1000 genomes]
rs1397435	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397436	0.80[ASN][1000 genomes]
rs1397437	0.87[EUR][1000 genomes]
rs1510683	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1510687	0.83[EUR][1000 genomes]
rs1510688	0.83[EUR][1000 genomes]
rs1567490	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011980	0.82[ASN][1000 genomes]
rs1848934	0.83[EUR][1000 genomes]
rs2221773	0.88[EUR][1000 genomes]
rs2391122	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28376541	0.82[EUR][1000 genomes]
rs28881307	0.82[EUR][1000 genomes]
rs28883271	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs36069962	0.89[EUR][1000 genomes]
rs36096326	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6821961	0.83[EUR][1000 genomes]
rs6825686	0.88[CEU][hapmap]
rs6834341	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839973	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6839976	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs955791	0.83[EUR][1000 genomes]
rs965298	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127923800-127927200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:127924000-127926600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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