Variant report

Variant	rs10022263
Chromosome Location	chr4:127934588-127934589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127930872..127934639-chr4:127934854..127936757,3	K562	blood:
2	chr4:127929476..127931219-chr4:127932867..127935276,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10002550	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10006007	0.87[ASN][1000 genomes]
rs10009534	0.84[ASN][1000 genomes]
rs10011592	0.87[ASN][1000 genomes]
rs10013614	0.87[ASN][1000 genomes]
rs10018143	0.87[ASN][1000 genomes]
rs10029439	0.80[AMR][1000 genomes]
rs10031723	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11098906	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11729025	0.80[AMR][1000 genomes]
rs11731081	0.80[AMR][1000 genomes]
rs11936668	0.88[EUR][1000 genomes]
rs12331011	0.80[AMR][1000 genomes]
rs12647371	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13147915	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435387	0.80[AMR][1000 genomes]
rs13435810	0.80[AMR][1000 genomes]
rs1397435	0.87[EUR][1000 genomes]
rs1397437	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510674	0.80[AMR][1000 genomes]
rs1510683	0.80[EUR][1000 genomes]
rs1510686	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1510687	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510688	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1567490	0.81[AFR][1000 genomes]
rs17208298	0.80[AMR][1000 genomes]
rs17208690	0.80[AMR][1000 genomes]
rs17274049	0.80[AMR][1000 genomes]
rs17274383	0.80[AMR][1000 genomes]
rs1848934	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1995902	0.80[AMR][1000 genomes]
rs2221773	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391122	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28376541	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28706560	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28711664	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28733864	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28881307	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28883271	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34261493	0.91[ASN][1000 genomes]
rs36069962	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36096326	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4834162	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62323485	0.80[AMR][1000 genomes]
rs62323486	0.80[AMR][1000 genomes]
rs62323519	0.80[AMR][1000 genomes]
rs6821583	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6821961	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6825686	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs6834341	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6839973	0.88[EUR][1000 genomes]
rs6839976	0.87[EUR][1000 genomes]
rs6845533	0.80[AMR][1000 genomes]
rs7662706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs7667215	0.80[AMR][1000 genomes]
rs7676052	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7686658	0.91[ASN][1000 genomes]
rs955791	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs965298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9997578	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127933200-127936800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:127934000-127934800	Enhancers	Cortex derived primary cultured neurospheres	brain

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