Variant report

Variant	rs965298
Chromosome Location	chr4:127953463-127953464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10002550	0.85[AMR][1000 genomes]
rs10022263	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10031723	0.83[AMR][1000 genomes]
rs11936668	0.81[EUR][1000 genomes]
rs13141365	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13142099	0.86[ASN][1000 genomes]
rs13147915	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1397435	0.85[EUR][1000 genomes]
rs1397437	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1510686	0.83[AMR][1000 genomes]
rs1510687	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1510688	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1848934	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2221773	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28376541	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28706560	0.91[ASN][1000 genomes]
rs28711664	0.83[AMR][1000 genomes]
rs28733864	0.85[AMR][1000 genomes]
rs28881307	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28883271	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs340439	0.86[ASN][1000 genomes]
rs340440	0.86[ASN][1000 genomes]
rs34261493	0.82[ASN][1000 genomes]
rs36069962	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36096326	0.80[EUR][1000 genomes]
rs4834162	0.83[EUR][1000 genomes]
rs62333854	0.82[AFR][1000 genomes]
rs6821583	0.87[ASN][1000 genomes]
rs6821961	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6825686	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs6839973	0.81[EUR][1000 genomes]
rs6839976	0.80[EUR][1000 genomes]
rs6840035	0.81[AFR][1000 genomes]
rs7662706	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7686658	0.82[ASN][1000 genomes]
rs955791	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs965298	WDYHV1	trans	brain	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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