Variant report
| Variant | rs6825686 |
|---|---|
| Chromosome Location | chr4:127954089-127954090 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10013614 | 0.83[AMR][1000 genomes] |
| rs10022263 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12647371 | 0.84[EUR][1000 genomes] |
| rs13141365 | 0.86[ASN][1000 genomes] |
| rs13142099 | 0.86[ASN][1000 genomes] |
| rs13147915 | 0.91[ASN][1000 genomes] |
| rs1397437 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1510683 | 0.85[EUR][1000 genomes] |
| rs1510687 | 0.87[ASN][1000 genomes] |
| rs1510688 | 0.87[ASN][1000 genomes] |
| rs1567490 | 0.81[EUR][1000 genomes] |
| rs1848934 | 0.87[ASN][1000 genomes] |
| rs2221773 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2391122 | 0.85[EUR][1000 genomes] |
| rs28376541 | 0.87[ASN][1000 genomes] |
| rs28706560 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28881307 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28883271 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs340439 | 0.86[ASN][1000 genomes] |
| rs340440 | 0.86[ASN][1000 genomes] |
| rs34261493 | 0.82[ASN][1000 genomes] |
| rs36069962 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6821583 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6821961 | 0.87[ASN][1000 genomes] |
| rs7662706 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7676052 | 0.84[AMR][1000 genomes] |
| rs7686658 | 0.82[ASN][1000 genomes] |
| rs955791 | 0.87[ASN][1000 genomes] |
| rs965298 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830055 | chr4:127794875-127993821 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6825686 | CACNA1H | trans | brain | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
