Variant report

Variant	rs6821961
Chromosome Location	chr4:127876604-127876605
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:127699741..127703647-chr4:127875173..127879234,5	K562	blood:
2	chr4:127655542..127661109-chr4:127874426..127880524,8	K562	blood:
3	chr4:127652170..127654874-chr4:127875964..127880032,4	K562	blood:
4	chr4:127875956..127880982-chr4:127903671..127906140,4	K562	blood:
5	chr4:127838477..127841001-chr4:127876179..127878168,3	K562	blood:
6	chr4:127638496..127641456-chr4:127876411..127877938,2	K562	blood:
7	chr4:127696264..127698678-chr4:127874695..127876616,2	K562	blood:
8	chr4:127845036..127847636-chr4:127875844..127878924,3	K562	blood:
9	chr4:127642487..127645698-chr4:127876053..127878799,3	K562	blood:
10	chr4:127875427..127880054-chr4:127888874..127892075,5	K562	blood:
11	chr4:127686360..127688227-chr4:127875695..127877283,2	K562	blood:
12	chr4:127657779..127661019-chr4:127875846..127879215,3	K562	blood:
13	chr4:127771841..127773556-chr4:127876449..127879979,3	K562	blood:
14	chr4:127875714..127878678-chr4:127910888..127914676,3	K562	blood:
15	chr4:127722324..127726396-chr4:127876150..127878934,3	K562	blood:
16	chr4:127876194..127877904-chr4:127948090..127950804,2	K562	blood:
17	chr4:127694991..127697764-chr4:127874695..127878637,6	K562	blood:
18	chr4:127641934..127643987-chr4:127875955..127878799,2	K562	blood:
19	chr4:127654777..127657151-chr4:127876043..127879204,4	K562	blood:
20	chr4:127834827..127837807-chr4:127876060..127878431,3	K562	blood:
21	chr4:127876070..127879293-chr4:127896514..127899164,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000199862	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10002550	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10006007	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10009534	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10011592	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10013614	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10018143	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10022263	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10029439	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10031723	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11098906	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11729025	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11731081	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11936668	0.85[EUR][1000 genomes]
rs12331011	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13147915	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13435387	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13435810	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1397437	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510674	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1510686	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1510687	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011892	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17208298	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17208690	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17274049	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17274383	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1848934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995902	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2221773	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28376541	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28706560	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28711664	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28733864	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28881307	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28883271	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34261493	0.87[ASN][1000 genomes]
rs36069962	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36096326	0.86[EUR][1000 genomes]
rs4834162	0.83[EUR][1000 genomes]
rs62323485	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62323486	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62323519	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62324472	0.83[ASN][1000 genomes]
rs6821583	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834341	0.82[EUR][1000 genomes]
rs6839973	0.85[EUR][1000 genomes]
rs6839976	0.84[EUR][1000 genomes]
rs6845533	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7662706	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7667215	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7676052	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7686658	0.87[ASN][1000 genomes]
rs955791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9997578	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127873000-127879600	Active TSS	K562	blood
2	chr4:127875600-127879000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:127876000-127877800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:127876000-127879200	Weak transcription	Right Atrium	heart
5	chr4:127876400-127877800	Enhancers	Fetal Muscle Trunk	muscle
6	chr4:127876600-127877000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:127876600-127877800	ZNF genes & repeats	Placenta	Placenta
8	chr4:127876600-127878000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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