Variant report

Variant	rs10029439
Chromosome Location	chr4:127820138-127820139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127809656..127812090-chr4:127818382..127821149,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10002550	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10006007	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10009534	0.88[ASN][1000 genomes]
rs10011592	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10013614	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10018143	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10022263	0.80[AMR][1000 genomes]
rs10031723	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11098899	0.87[ASN][1000 genomes]
rs11098906	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11729025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12499264	0.80[EUR][1000 genomes]
rs12513145	0.87[ASN][1000 genomes]
rs13114412	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13152355	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13152658	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13435387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397437	0.86[AMR][1000 genomes]
rs1472701	0.87[ASN][1000 genomes]
rs1503630	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1503633	0.87[ASN][1000 genomes]
rs1510674	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510686	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1510687	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1510688	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16997940	0.87[ASN][1000 genomes]
rs17011892	0.83[ASN][1000 genomes]
rs17208298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17208690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17274049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17274383	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848934	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1960359	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1995902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221773	0.86[AMR][1000 genomes]
rs28376541	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28711664	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28733864	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28866815	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28897108	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36069962	0.86[AMR][1000 genomes]
rs4834144	0.87[ASN][1000 genomes]
rs4834146	0.87[ASN][1000 genomes]
rs4834147	0.87[ASN][1000 genomes]
rs62323482	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62323485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62324472	0.83[ASN][1000 genomes]
rs6821583	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6821961	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6845533	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849694	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7662706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667215	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676052	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs955791	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs993364	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9997578	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127817600-127821200	ZNF genes & repeats	K562	blood
2	chr4:127818800-127821600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:127819000-127822200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:127819400-127821000	Enhancers	Fetal Heart	heart
5	chr4:127819600-127820600	Enhancers	Fetal Brain Male	brain
6	chr4:127819600-127821800	Enhancers	Fetal Muscle Leg	muscle
7	chr4:127819600-127821800	Enhancers	Osteobl	bone
8	chr4:127819600-127822400	Enhancers	NHDF-Ad	bronchial
9	chr4:127819800-127820600	Enhancers	Fetal Lung	lung
10	chr4:127819800-127821000	Enhancers	Adipose Nuclei	Adipose
11	chr4:127819800-127821600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:127819800-127821600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:127819800-127821600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:127819800-127821600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:127819800-127821600	Enhancers	HSMMtube	muscle
16	chr4:127819800-127821800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:127819800-127821800	Enhancers	NHLF	lung
18	chr4:127820000-127820600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:127820000-127820600	Enhancers	Fetal Stomach	stomach
20	chr4:127820000-127820600	Enhancers	Left Ventricle	heart
21	chr4:127820000-127821000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr4:127820000-127821400	Enhancers	Colon Smooth Muscle	Colon
23	chr4:127820000-127821400	Enhancers	HSMM	muscle
24	chr4:127820000-127821600	Enhancers	Aorta	Aorta
25	chr4:127820000-127821800	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links